Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0040
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.032
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 34   0.057
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 32   0.30 
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              31   0.53 
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          29   1.6  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   2.8  
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 28   3.7  
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               28   3.7  
SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           28   4.9  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  28   4.9  
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = -1

Query: 222 DAEITQYIEEEFVSQQADTIRSLAGHTSDXKR 127
           DA++T +IE  F+++Q + I+ LAGH ++ KR
Sbjct: 309 DAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 13/42 (30%), Positives = 30/42 (71%)
 Frame = -1

Query: 252 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKR 127
           E+ K ++   DA+++ +IE+ F+++Q ++IR L+G+ +  K+
Sbjct: 94  ELEKTAEKNGDAQMSDFIEDHFLTEQVESIRELSGYIAVLKK 135


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -1

Query: 225 HDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGK 103
           +DA++  +IEE F+++Q D+I+ L+ + S  +R   E  G+
Sbjct: 39  NDAQMQDFIEETFLNEQMDSIKQLSNYVSTLRRLGGEGLGE 79


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -2

Query: 248 SLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCL 93
           SLK +  ++   SL TSR+     K  R  + + +P+TSS S P+T+ KT L
Sbjct: 121 SLKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSSKSSPKTSPKTSL 170


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = -1

Query: 255 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDXKRFITENNG 106
           +EVT N+  L D  +TQ  E        EE+V +    IR +   T   KR+IT++NG
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 452 DDSWEKTIGLIKHVTKRGGKMDFSSHTTXKGD 357
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 248 SLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 90
           S KT+  +  ++SL TS + S    P      R +P+TSS + P+T+ KT L+
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISP------RTSPKTSSKTSPKTSLKTSLN 395


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 220 IVEEVAVFSDFPWMK-KILSASCFCV 294
           +++++  F DFP+MK ++L +SCF V
Sbjct: 29  LIDKLCEFEDFPYMKNQLLPSSCFRV 54


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 220 IVEEVAVFSDFPWMK-KILSASCFCV 294
           +++++  F DFP+MK ++L +SCF V
Sbjct: 144 LIDKLCEFEDFPYMKNQLLPSSCFRV 169


>SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 262 SSTGSH*KQRPPPRC*DHSIHRGGIRESASRYDS*PRGSH 143
           + TG H  + P      H   R G  ESA RYD   RG+H
Sbjct: 12  TQTGDHDAESPETPSDGHGSARPGTTESAGRYD---RGTH 48


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 163 NRIGLLTHEFLLDVLSDLS----IVEEVAVFSDFPWMKKILSASCFCVSKALAR 312
           NR+ LL++   L +L+D S    +VEE   +   P +  +L+A C C  K + +
Sbjct: 100 NRLCLLSNRAALAMLNDASPMTFMVEEGLYYLILPLLLTLLTARCLCPFKIVTQ 153


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 248 SLKTATSSTMLRSLNTSRRNS*VSKPIRF--VASRVTPRTSSGS*PRTTGKT 99
           S KT+  +  ++SL TS + S    P      +S+ +P+TS  S P+T+ KT
Sbjct: 101 SPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKT 152


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 468 LQEIIGRFVGENHWSHKARH*EGWEDGLLESH 373
           L  IIG F+G  + S KA+   G++DG+ +++
Sbjct: 185 LDVIIGTFIGPQNASSKAQGFLGYQDGVFQTN 216


>SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 144 TSDXKRFITENNGKDLS 94
           T D   F TENNGKDLS
Sbjct: 243 TEDELDFSTENNGKDLS 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,362
Number of Sequences: 59808
Number of extensions: 224354
Number of successful extensions: 566
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)