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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0067.Seq
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   8e-11
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           33   0.21 
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      31   1.1  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        31   1.1  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    30   2.0  
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               29   3.5  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   6.1  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 29   6.1  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   6.1  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   6.1  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   8.0  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 35/55 (63%), Positives = 35/55 (63%)
 Frame = +2

Query: 257 SAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 421
           SAAKF                    FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 101 SAAKFIGAGAATVGAAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ PL +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 79  NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 137

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 138 S--ISTSILPYNTTVIATP 154



 Score = 32.7 bits (71), Expect = 0.37
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
           NS ++ PL +VP +T ++PA P   S   +  + S   ++T L +S+ L +
Sbjct: 481 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 530



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 280 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 338

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 339 S--ISTSILPYNTTVIATP 355


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +
Sbjct: 498 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 547



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +
Sbjct: 699 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 748



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           N  ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 96  NITMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 154

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 155 S--ISTSILPYNTTVIATP 171


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 609 NSTMIFPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 667

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 668 S--ISTSILPHNTTVIATP 684



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +
Sbjct: 6   NSTMIFPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLAR 55



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++P  P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 207 NSTMILPSTSVPYNTTLIPG-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 265

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 266 S--ISTSILPYNTTVIATP 282


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 96  NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 154

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 155 S--ISTSILPYNTTVIATP 171



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
           NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355

Query: 312 ELVLEQSSAPSSSAMPGTP 368
              +  S  P ++ +  TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
            NS ++ P  +VP +T ++PA P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 1101 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIP 1159

Query: 312  ELVLEQSSAPSSSAMPGTP 368
               +  S  P ++ +  TP
Sbjct: 1160 S--ISTSMLPYNTTVIATP 1176



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 135  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
            NS ++ P A+VP +T ++PA P   S   +  + S   ++T L +S+ L +
Sbjct: 1905 NSNMILPSASVPYNTTLIPA-PNATSTAATKMSPSYVANMTTLDSSVSLTR 1954



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 135  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
            NS ++ P  +VP +T  +PA P   S   +  + S   ++T L +S+ L +
Sbjct: 1704 NSTMILPSTSVPYNTMFIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 1753



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 135 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQ 287
           NS ++ P  +VP +T  +PA P   S   +  + S   ++T L +S+ L +
Sbjct: 699 NSTMILPSTSVPYNTTFIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 748



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 135  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDITLLPNSLVLVQRQWE-*LVP 311
            NS ++ P  +VP +T ++P  P   S   +  + S   ++T L +S+ L +      L+P
Sbjct: 1302 NSTMILPSTSVPYNTTLIPG-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 1360

Query: 312  ELVLEQSSAPSSSAMPGTP 368
               +  S  P ++ +  TP
Sbjct: 1361 S--ISTSILPYNTTVIATP 1377


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 523 KPHM*MAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 395
           +PH    +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 203 EPHF--ELVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 263 QQSNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 168
           Q+ NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 79  QRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 233  GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 141
            G  G  C +LC+   +++C G G C +W+  C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 233 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 84
           G + P   E CR   +  C    C +++HQC   E+G  P      S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 255
           HW + +    PI RW+ L   H+SL   P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 74  KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 232
           ++  VC  TD+PC  + H ++ C   T   +T P    T C  T   S  +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 TCSSTHPYTDGTCCPYTALCSAV 223
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 TCSSTHPYTDGTCCPYTALCSAV 223
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 212 RELCRDSRYHLCMGGYCCKWSHQCR 138
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,106,701
Number of Sequences: 59808
Number of extensions: 575738
Number of successful extensions: 2587
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2584
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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