Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0057.Seq
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              163   9e-41
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               97   9e-21
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.032
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 29   2.8  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.8  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        28   4.8  
SB_21760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_53484| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_6532| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)                     27   8.5  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   8.5  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          27   8.5  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  163 bits (396), Expect = 9e-41
 Identities = 74/89 (83%), Positives = 81/89 (91%)
 Frame = -1

Query: 520 REPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 341
           R   R+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ
Sbjct: 13  RSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 72

Query: 340 LIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
           LIKNGKK+TAFVP DGCLN+IEENDEVL+
Sbjct: 73  LIKNGKKITAFVPNDGCLNYIEENDEVLI 101



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = -3

Query: 254 AGFGRKGHAVGDIPGV 207
           +GFGR+GHAVGDIPG+
Sbjct: 102 SGFGRRGHAVGDIPGI 117



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 552 KPRGIRTARKHVNHRVNSDGRTKNSRK 472
           KPRG+RTARK  +HR +     K  +K
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKK 28


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 43/50 (86%), Positives = 48/50 (96%)
 Frame = -1

Query: 403 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 254
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL+
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLI 102



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/41 (92%), Positives = 41/41 (100%)
 Frame = -3

Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
           +GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 103 SGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -1

Query: 418 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 302
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 473 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 375
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 570 RAIQMGKPRGIRTARKHVNHRVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 421
           R + +G P   R      +HR        N++KP  +R+GR+T+S+  +T
Sbjct: 90  RYVDIGSPYSSRCTHVQFHHR------DTNTKKPVHLRDGRVTVSLAAMT 133


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 405  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 500
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 293 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 409
           T   D+   F    NE      AD R GL+    NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


>SB_21760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 337 IKNGKKVTAFVPRDGCLNHIEENDEVLVRDSVVKVTPSVTFPE 209
           IK+G         DGC+N + +  E+ V ++   +  S TFPE
Sbjct: 5   IKSGPSARYLRDPDGCINVLWKKAELGVIENAKPIESSSTFPE 47


>SB_53484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 411 MPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRGGSRAYAP 533
           +PFA   P  G+   +  +W F    + HR  R   + YAP
Sbjct: 11  LPFALTTPTWGMCLFYACLWCFRQ--TGHRVFRFQKKKYAP 49


>SB_6532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 453 HFVPMWAFLNSLSAHRCSRG-GSRAYAPFVF 542
           H V  WAF N+LS  R  +G   R ++P+ F
Sbjct: 70  HLVQTWAFPNTLSKQRDMKGVHLRPFSPYQF 100


>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
          Length = 870

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 453 HFVPMWAFLNSLSAHRCSRG-GSRAYAPFVF 542
           H V  WAF N+LS  R  +G   R ++P+ F
Sbjct: 837 HLVQTWAFPNTLSKQRDMKGVHLRPFSPYQF 867


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 305 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 409
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 109 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 246
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,728
Number of Sequences: 59808
Number of extensions: 438391
Number of successful extensions: 847
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)