Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0055.Seq
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              126   9e-30
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              123   1e-28
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   3.4  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.5  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   7.9  
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         27   7.9  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  126 bits (305), Expect = 9e-30
 Identities = 57/66 (86%), Positives = 62/66 (93%)
 Frame = +2

Query: 53  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73

Query: 233 IKNGKK 250
           IKNGKK
Sbjct: 74  IKNGKK 79



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 363
           K+  AFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 78  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  123 bits (296), Expect = 1e-28
 Identities = 56/65 (86%), Positives = 62/65 (95%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
           K+  AFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKK
Sbjct: 79  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138

Query: 424 ERPRS 438
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +2

Query: 167 EKVGVEAKQPNSAIRKCVRVQLIKNGKK 250
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 97  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 195
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -1

Query: 461 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 282
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 281 RQPSRGTNASL 249
           +Q  R  N  L
Sbjct: 67  QQCWRSLNTVL 77


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 165  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 70
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 57  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 149
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 152 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 247
           KG+ ++    + K+PNSA RKC  ++L  NGK
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGK 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,564
Number of Sequences: 59808
Number of extensions: 396634
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)