Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0029.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)              31   0.99 
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   0.99 
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   9.2  

>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
          Length = 421

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 394 APYGIAAPYGIAAPYTAYGAYGV-APYGL 477
           AP+G+  PYG + P +    YG   PYGL
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 394  APYGIAAPYGIAAPYTAYGAYGV-APYGL 477
            AP+G+  PYG + P +    YG   PYGL
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           +T PYGI  PY I  PY     Y +  PY +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDITWPYDI 613



 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 477
           +T PY I  PY I  PY     Y +  PYG+
Sbjct: 595 ITCPYNITCPYDITWPYDITWPYDITCPYGI 625



 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 477
           +T PYGI   YGI  PY     +G+  PY +
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGITCPYDI 649



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYG-VAPYGL 477
           +T PY I  PY I  PY     YG    YG+
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYGFTCAYGI 493



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 477
           +T PYGI   +GI  PY     Y +  PY +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDITCPYDI 661



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 370 HLASPL-VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           H+  P  +T PY I  PY I  PY     Y +  PY +
Sbjct: 708 HITCPYDITYPYDITCPYHITCPYDITWPYDITWPYDI 745



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 643 ITCPYDITCPYDITCPYDITCPYDITYPYDI 673



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 499 ITCPYDITCPYDITCPYYITCPYDITYPYDI 529



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 370 HLASPL-VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           H+  P  +T PY I  PY I   Y     YG+  PY +
Sbjct: 558 HITCPYDITCPYDIKCPYDITCLYHITCPYGITYPYDI 595



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 477
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 517 ITCPYDITYPYDITCPYDITCPYDITYPYDI 547



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 477
           +T PY I  PY I  PY     YG+   YG+
Sbjct: 601 ITCPYDITWPYDITWPYDITCPYGITCLYGI 631



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 388 VTAPYGIAAPYGIAAPYTAYGAYGV 462
           +T PY I  PY I  PY     YG+
Sbjct: 667 ITYPYDITYPYDITCPYYITCPYGI 691


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 394  APYGIAAPYGIAAPYTAYGAYGV-APYGL 477
            AP+G+  PYG + P +    YG   PYGL
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394  APYGIAAPYGIAAPYTAYGAYGV-APYGLG 480
            APY    PY I  PY     Y   APY  G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 376 ASPLVTAPYGIAAPYGIAAPYTAYGAYGVAPY 471
           +SP+   PYG + P  +  PY     YG+  Y
Sbjct: 817 SSPVYEVPYGYSVPCSLQTPYGYPVPYGLQDY 848


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,381
Number of Sequences: 59808
Number of extensions: 182188
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)