Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   41   0.001
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)                   31   1.1  
SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)              30   2.0  
SB_15723| Best HMM Match : DUF1639 (HMM E-Value=1.7)                   30   2.6  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   8.1  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +2

Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
           +N+T+ +VE  EG+DGETFFLY+F
Sbjct: 255 FNETVQLVESDEGMDGETFFLYLF 278



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 SVSQPVETGTASE--VDYDWLPKEIVNQLKKS 351
           S   P+E GT  +  +DY+WLPKE   + + +
Sbjct: 304 SSKAPIEMGTQQDGDIDYEWLPKETTTEFENT 335


>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 221 VLRREPTLHQHQGRHIRRMSLHLDLRILPQC*VSGCTRNALKSAATTNTKHKP 63
           ++RREP + + + R++ RM    + R+ P C + GCT   + S     +   P
Sbjct: 94  LIRREPHVKRAEERNLARMLRMFNSRLPPDCFLIGCTTERILSRENDESTGNP 146


>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
          Length = 283

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 341 SKNLPRRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKP 460
           S  + ++++ R+A  KQ+D+QAT+ K+ +    R    KP
Sbjct: 142 SPKISKQQAPRQASNKQQDKQATSPKTSKQQAPRQASRKP 181


>SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)
          Length = 166

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 338 NSKNLPRRRSSRRA-QGKQRDQQATTKKSFEVMIKRDIKHKPVVHTSVCEMTEIKIGL 508
           +SK+  +R S+ RA +GK R  +A T  ++E ++  + K K   + SVCE   + + L
Sbjct: 30  SSKSKRKRGSTERAKEGKPR--RARTAFTYEQLVALENKFKSTRYLSVCERLNLALSL 85


>SB_15723| Best HMM Match : DUF1639 (HMM E-Value=1.7)
          Length = 153

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +1

Query: 256 PRSVSQPVETGTASEVDY---DWLPKEIVNQ---LKKSPKTPKQSPRARKAKRSA 402
           P   +Q ++  + + + Y   DWL K+  NQ    +K+PK PK    A++A+ S+
Sbjct: 40  PTKKTQALKRSSPTSLSYPQKDWLSKKPKNQDIRTRKTPKPPKTPSTAKRARPSS 94


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 356  RRRSSRRAQGKQRDQQATTKKSFEVMIK--RDIKHKPV 463
            R+R     +G++RD+    +KSFE M +  +D K KP+
Sbjct: 1004 RKREVDTDEGRRRDRAPKPRKSFEDMFRKEKDKKEKPL 1041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,162
Number of Sequences: 59808
Number of extensions: 417537
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)