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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0033
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              31   1.3  
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   31   1.3  
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  31   1.3  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.3  
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           31   1.3  
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       31   1.3  
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          31   1.3  
SB_28116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_17668| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   29   3.9  
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     29   5.1  
SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -1

Query: 728 NCNTTHYRAKWVTGPGSTARV 666
           NCNTTHYRA W     STARV
Sbjct: 92  NCNTTHYRANW----SSTARV 108


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 14  NCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 70  NCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 638 NCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 49  NCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 11  NCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 51  NCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728  NCNTTHYRAKW 696
            NCNTTHYRA W
Sbjct: 1889 NCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 49  NCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 11  NCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 43  NCNTTHYRANW 53


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 70  NCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 81  NCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 57  NCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 728 NCNTTHYRAKW 696
           NCNTTHYRA W
Sbjct: 81  NCNTTHYRANW 91


>SB_28116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 530 LTQFILCYFSVACAWSREERAFSRSFAEF 444
           ++  I+ YF+     SRE+RAF+RS A +
Sbjct: 46  ISNAIIIYFTATARRSREQRAFNRSHAAY 74


>SB_17668| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 530 LTQFILCYFSVACAWSREERAFSRSFAEF 444
           ++  I+ YF+     SRE+RAF+RS A +
Sbjct: 46  ISNAIIIYFTATARRSREQRAFNRSHAAY 74


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 728 NCNTTHYRA-KWVTGPGSTARVNSVP 654
           NCNTTHYRA +  T  G  +R +  P
Sbjct: 88  NCNTTHYRANRSSTSGGGRSRTSGSP 113


>SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = -2

Query: 562 AMSCSRLPERY*RNLSCAISALPAP---GRARSGHFPGHLPN--LCGLKRKITTVVSCAA 398
           A S   LPE    NL+C+    P P        GH   H P+  +  + R ++ V +C A
Sbjct: 249 ASSSPTLPENSQVNLTCSADGTPLPTFTWIGPQGHTVAHRPSYTIPMVHRDMSGVYTCVA 308

Query: 397 WNWCXR 380
            + C R
Sbjct: 309 TDGCGR 314


>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -2

Query: 556 SCSRLPERY*RNLSCAISALPAP---GRARSGHFPGHLPN--LCGLKRKITTVVSCAAWN 392
           SC  + ER   NL+C+    P P     +  GH   H P+  +  + R+++ V +C A +
Sbjct: 20  SCLTVTERDQVNLTCSADGTPPPTFTWISPQGHTVAHGPSYTIPMVHREMSGVYTCVATD 79

Query: 391 WCXR 380
            C R
Sbjct: 80  GCGR 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,838
Number of Sequences: 59808
Number of extensions: 386034
Number of successful extensions: 2336
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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