Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0027
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)              105   3e-23
SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   3e-23
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.031
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      31   0.88 
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 29   3.6  
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_19470| Best HMM Match : rve (HMM E-Value=0.0029)                    29   4.7  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              28   6.2  
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  28   6.2  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   6.2  

>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score =  105 bits (252), Expect = 3e-23
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           E++  N + WSP+GQF VLA L    G LEF DT D+  MN A+H+  + +EWDPTGRYV
Sbjct: 385 EKRQANTISWSPNGQFCVLAGLRSMSGVLEFHDTGDWVCMNQAEHFMATDVEWDPTGRYV 444

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
            T VS    K+D GY+IWSFQGK+
Sbjct: 445 ATSVSWWAHKVDNGYFIWSFQGKL 468



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 38/91 (41%), Positives = 50/91 (54%)
 Frame = +1

Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
           G+  +R   + F QF WRPRP TLL              Y   FE KDRM  S+ASKEL+
Sbjct: 466 GKLLQRHALDQFCQFLWRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDRMSQSRASKELI 525

Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRRPNL 516
            +R  +MK+F  YR+ K  E+ +QK +R  L
Sbjct: 526 ERRRRKMKEFEGYRQKKSNEFIQQKKQRLEL 556


>SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score =  105 bits (252), Expect = 3e-23
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           E++  N + WSP+GQF VLA L    G LEF DT D+  MN A+H+  + +EWDPTGRYV
Sbjct: 4   EKRQANTISWSPNGQFCVLAGLRSMSGVLEFHDTGDWVCMNQAEHFMATDVEWDPTGRYV 63

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
            T VS    K+D GY+IWSFQGK+
Sbjct: 64  ATSVSWWAHKVDNGYFIWSFQGKL 87



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLL 318
           G+  +R   + F QF WRPRP TLL
Sbjct: 85  GKLLQRHALDQFCQFLWRPRPATLL 109


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 113 TIMNVADHYQMSGIEWDPTGRYVVTGVSSXKCKM 214
           TI+    HY + G+ WDP G+YVVT  S   C++
Sbjct: 227 TILKDHKHY-VQGVCWDPLGQYVVTNSSDRSCRL 259


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 EWDPTGRYVVTGVSSXKCKMDCGYYIWSFQGKI 253
           EW P G +++T  ++ + +   G+ IW + G +
Sbjct: 306 EWSPDGEHILTATTAPRLREGNGFKIWHYTGAL 338


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 376  ESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRR 507
            E+++ +R  +  +E      EQM+K  E RE K+QE  E++ R+
Sbjct: 1261 EAEEELRRLQEEREY----REQMRKIAEARERKLQEEEEERRRQ 1300


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 379 SKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQK 498
           S D    S ASK+    + E+ K+  E RE + +EW E K
Sbjct: 701 SLDHAWKSTASKQSGEDKREREKREREIREREEREWEENK 740


>SB_19470| Best HMM Match : rve (HMM E-Value=0.0029)
          Length = 347

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 126 TFIMVKSFVSKNSNAPPVSPRLARTMNCPDGDQKRWLNGFL 4
           TF+  + ++ +++  P +  R    + C D   KRW + +L
Sbjct: 228 TFVGAEKWIKQSNTLPDLRKRAKHLIKCKDAVWKRWTDEYL 268


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/61 (19%), Positives = 27/61 (44%)
 Frame = +2

Query: 32   SPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSXKCK 211
            +P+G+++      L    +    +  + +     +Y M+ + + P G Y+ TG    K K
Sbjct: 1217 NPTGEWLAFGCTSLGQLLVWEWQSESYILKQQGHYYDMNVLAYSPDGNYIATGGDDGKVK 1276

Query: 212  M 214
            +
Sbjct: 1277 L 1277


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 17  NHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHY--QMSGIEWDPTGRYVVTG 190
           N   +SP  + I L       G L   D +  T+  V   Y   ++ + W P G+YVVTG
Sbjct: 278 NEFSFSPDCKHIALVT---QDGYLRVFDFDAQTLYGVMKSYFGGLTCVCWSPDGKYVVTG 334


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 382 KDRMRSSKASKEL---VAKRTEQMKKFTEYRESKIQEWNEQK 498
           +  +RSSK  +EL   +AKR  QM++  E RE+  + + E+K
Sbjct: 5   ESELRSSKTIEELRFEMAKRNTQMQEIEEERETLKKFYEEEK 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,045,436
Number of Sequences: 59808
Number of extensions: 380825
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)