Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0026
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               29   2.7  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.3  

>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 271 AHGPRHASRGPLREHVVP*PPTPGYSPGLHSK*IKKTCC 387
           A GP  A  G  +    P P  PGY P L  +   + CC
Sbjct: 344 AQGPYQAPLGTYQGPAPPYPQLPGYGPPLQGELPGRICC 382


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 360  MEAGGVPRGRRLWDHVFTQRSPRRVTRP 277
            +E  G  RG RLWD+     S R  TRP
Sbjct: 2664 VELYGCRRGERLWDNAVGMHSGRIKTRP 2691


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,365,136
Number of Sequences: 59808
Number of extensions: 415499
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)