Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0019
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25316| Best HMM Match : HycH (HMM E-Value=9.1)                      28   6.2  
SB_42801| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_10774| Best HMM Match : DUF1690 (HMM E-Value=5)                     28   8.3  

>SB_25316| Best HMM Match : HycH (HMM E-Value=9.1)
          Length = 228

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = +3

Query: 213 VYFIDFIKWFEYFH-----VVDSLRDNEIKTNNFLCRLLLETKQGNIF 341
           ++ ++FIKW +Y       +V + RD EI+   FL R++L  ++G +F
Sbjct: 16  LFLMEFIKWLQYSQSMFNPLVYTFRDREIR-RTFL-RIILWCQRGRVF 61


>SB_42801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 448 HHARYDN----IVGKSQNNQITRKV*KHLHE 528
           HHA  +N    I+G SQN  + R++ KH+ E
Sbjct: 148 HHANKENNFVRIMGLSQNENVNRRLAKHIFE 178


>SB_10774| Best HMM Match : DUF1690 (HMM E-Value=5)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 448 HHARYDN----IVGKSQNNQITRKV*KHLHE 528
           HHA  +N    I+G SQN  + R++ KH+ E
Sbjct: 148 HHANKENNFVRIMGLSQNENVNRRLAKHIFE 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,236
Number of Sequences: 59808
Number of extensions: 322397
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)