Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9344| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   8.0  
SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_9344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 118 YFSVMGG*KLKQIQIHTFAYILRKWLLSKTAT 23
           YF   GG K  ++      YI++KWLL K  T
Sbjct: 19  YFESRGG-KFPEVCFFGLQYIIKKWLLGKVVT 49


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 330  NNYIYLIVNLCQKMELM*LYSFQRHLIL 247
            N YI  IV     + L+ L SF RH+I+
Sbjct: 3997 NTYIVAIVIFLSTLRLLYLMSFNRHIIV 4024


>SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 NNYIYLIVNLCQKMELM*LYSFQRHLIL 247
           N YI  IV     + L+ L SF RH+I+
Sbjct: 726 NTYIVAIVIFLSTLRLLYLMSFNRHIIV 753


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,090,887
Number of Sequences: 59808
Number of extensions: 138505
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)