Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0050.Seq
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   3.1  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              29   5.5  
SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)       28   7.2  

>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 188  MYKNVKPILSTKVSQWSFSTLLNDIEGFSPK*NPK 292
            M KNVK +   +V++W+F +   D+E      NP+
Sbjct: 1136 MLKNVKKVSEREVTKWAFISSPEDLESLVSNLNPR 1170


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 GFRSESCIEQIHDECIKT*NLFYPQKCL 230
           G   E+C   +HDEC++T N  +  K L
Sbjct: 166 GLHCENCTLSVHDECLETANEVFTCKAL 193


>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
          Length = 456

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 252 NNVENDH*DTFVDKIGFTFLYIH 184
           + +END  DTF D + + FLY H
Sbjct: 245 DKIENDPHDTFADLVIYDFLYSH 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,721,518
Number of Sequences: 59808
Number of extensions: 360046
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)