Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0014.Seq
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)                 31   0.78 
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
          Length = 849

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 426 HRSAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSPPGRSGEEKFHSRLVE 578
           H SAP+ RS  Y R      + +AA    A   GS   RSG+    SR V+
Sbjct: 699 HESAPSYRSTCYRRYRRRDSARKAAAGGRAADQGSTACRSGDSASRSRTVQ 749


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 420 SPHRSAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSPPGRSGEEK 557
           S  RS    R+ S+  + HS V  R    SP++ P +PP  SG+E+
Sbjct: 273 SRSRSGSRSRTRSHSPSDHSSVGSR----SPSKQPQTPPHESGKEE 314


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 222 KESPPPSPRWRHDASSEERLGHIQLSKVPSSL 317
           +E+ PP+PRW  D   + R+ H++ S     L
Sbjct: 429 QENQPPTPRWSDDEPRKSRM-HVRSSSASDRL 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,714
Number of Sequences: 59808
Number of extensions: 329028
Number of successful extensions: 1282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)