Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C08f
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   8e-05
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             27   3.1  
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              27   3.1  
SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               27   4.1  
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)              27   5.4  
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)                     26   7.1  
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)                     26   7.1  
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)              26   7.1  
SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              26   7.1  
SB_3441| Best HMM Match : PDZ (HMM E-Value=0.0055)                     26   7.1  
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  

>SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
 Frame = +3

Query: 21  YLVNFVILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRAL 200
           + VN +++ G LV++ V+G+ V +  S+ A LF++HK  A   L +G    + L     L
Sbjct: 344 WFVNIILVIGVLVRIFVFGEPVTRPNSERATLFWRHKNKADIALSQG----SNLVAAEHL 399

Query: 201 EACGRSVQAGGPGQAKYTALTAAV---LRQXLQRLPFGGFLA 317
           E C R +    P   K       V   LR  L RL  G  LA
Sbjct: 400 EVCLRVLGRPTP-HTKLDVFCGVVWHCLRHALHRLGVGRRLA 440


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 251 VLSLTWATCLDTSSTCFQCS 192
           +L++ + TC  +SS CFQC+
Sbjct: 10  ILAVLYLTCFISSSLCFQCA 29


>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 66  LVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRAL-EACG 212
           LVY DS      KE      +KRL  N LK+G   ++     R L E CG
Sbjct: 105 LVYCDSFKSKPLKERRKIVYNKRLCRNCLKEGHFADSCPSSGRCLKEGCG 154


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 251 VLSLTWATCLDTSSTCFQCS 192
           +L++ + TC  +SS CFQC+
Sbjct: 10  ILAVLYLTCFISSSLCFQCA 29


>SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 66  LVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRAL-EACG 212
           LVY DS      KE      +KRL  N LK+G   ++     R L E CG
Sbjct: 165 LVYCDSFKSKPFKERRKIVYNKRLCRNCLKEGHFADSCPSSGRCLKEGCG 214


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +1

Query: 211 EEVSRQVAQVKLSTRPSQRLCFGXCCRDYRSVASLHVALEIC 336
           E+  + + +V++ +RP   +C   C + Y+ +     + +IC
Sbjct: 529 EKCKKGLFKVRMPSRPQSAICVPECPQGYKGIVVNETSEQIC 570


>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
          Length = 977

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 240 DLGHLPGHFFHMLPMLDGVLVAYYLDRPF 154
           +L  L     H  P   G+LVA YL +PF
Sbjct: 511 ELASLDNFEIHTFPSALGILVASYLSQPF 539


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 45  GGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELH 191
           G C+V  ++YG  + +    + G+   H   +G   ++G+ N   L  H
Sbjct: 292 GRCVVARIMYGGMIHRQGENDPGILSAHIMYSGIIHRQGENNPGILSAH 340


>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 548

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 223 WTLLPHASNARWSS 182
           WT++P AS ARW +
Sbjct: 522 WTVIPQASTARWDA 535


>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 570

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 223 WTLLPHASNARWSS 182
           WT++P AS ARW +
Sbjct: 522 WTVIPQASTARWDA 535


>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
          Length = 646

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 216 SVQAGGPGQAKYTALTAAVLRQXLQRLPFGG 308
           ++++GGPG    T +T  VL    + + FGG
Sbjct: 179 ALESGGPGDEDSTFITLGVLTGGTENVFFGG 209


>SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 135 AFYVCKINQLPWTDF 91
           AFY+C IN   +TDF
Sbjct: 211 AFYICDINAFDYTDF 225


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +1

Query: 211 EEVSRQVAQVKLSTRPSQRLCFGXCCRDYRSVASLHVALEIC 336
           E+  + + +V++ +RP   +C   C + Y+ +     + +IC
Sbjct: 178 EKCKKGLFKVRMPSRPQSAICVLECPQGYKGIVVNETSEQIC 219


>SB_3441| Best HMM Match : PDZ (HMM E-Value=0.0055)
          Length = 160

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 45  GGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELH 191
           G C+V  ++YG  + +    + G+   H   +G   ++G+ N   L  H
Sbjct: 68  GRCVVARIMYGGMIHRQGENDPGILSAHIMYSGIIHRQGENNPGILSAH 116


>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1178

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 35  CNTWRLFGKVTSLWRFCTKKSVQGSWF 115
           C+   +  K++  WR+C    + G W+
Sbjct: 799 CHWNHVLPKLSQFWRYCILPEILGRWY 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,972
Number of Sequences: 59808
Number of extensions: 227941
Number of successful extensions: 563
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)