Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)           61   3e-10
SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       27   5.7  
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)           27   7.6  
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)                   27   7.6  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   7.6  
SB_28671| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 26   10.0 

>SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)
          Length = 103

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +1

Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
           MVLDLDL+RADK GNPDKIRENQ KR+ DV L D
Sbjct: 40  MVLDLDLYRADKGGNPDKIRENQSKRYSDVTLVD 73


>SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 211 VPIRHGKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 86
           +P++    F I  KLA K   N   P+++R+   N  RYN +
Sbjct: 127 LPVKENVKFNIL-KLAHKPLYNNSFPEYLRLSVRNDTRYNLR 167


>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 141 GLFCFSFLANLRLIINVFPCRIGTRETRDDVFDNFKEYFYICNLSEL 281
           GL+    L+N +++    PC  G R      FD F E + +C+L  L
Sbjct: 391 GLYQLQVLSNEKIVS--LPCCEGPRCPLQRFFDCFSEVYNMCDLKAL 435


>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
          Length = 680

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 74  PVTP-LSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLPVPNRHE 214
           P+ P LS   N +S + P P RN    F  + Q       +P P  HE
Sbjct: 386 PIPPQLSFYPNLLSFSTPPPRRNPFAPFPSYSQSLPEMDYMPPPRNHE 433


>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
          Length = 831

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 254 IFFKIIKHVVSRLPRADSAREDVYY 180
           I+FK  +  +  LP ADSARE ++Y
Sbjct: 730 IYFKT-RDFIQSLPLADSAREKIWY 753


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 172 KLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH--WRRTKLKL 53
           K  + L + R IP     R G  +RY  KRRH  +++ K+K+
Sbjct: 610 KYCRLLFRGRKIPLRKGKRGGLVVRYRKKRRHLSFKQGKVKM 651


>SB_28671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 254 IFFKIIKHVVSRLPRADSAREDVYY 180
           I+FK  +  +  LP ADSARE ++Y
Sbjct: 9   IYFKT-RDFIQSLPLADSAREKIWY 32


>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  CPSPVTPLSVISNSVSCAH 121
           CPSP TP S  SNS S A+
Sbjct: 40  CPSPTTPPSSRSNSSSSAY 58


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 29  TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPL 133
           T + F      L P PV PL + S+  S  H +P+
Sbjct: 126 TLDEFPRCTGPLVPRPVRPLMLASDQFSSLHMFPM 160


>SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1022

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 241 LSNTSSLVSLVPIRHGKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHW 74
           LS T +  +L PI+  K  I+K  LAK + +N      V +R      +N    HW
Sbjct: 30  LSGTHTSTALQPIKKKKKRIVKFALAKTIVENL---YGVMIRESCMELFNVSYCHW 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,492,896
Number of Sequences: 59808
Number of extensions: 216594
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)