Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C01f
(447 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 214 3e-56
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.020
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 30 0.76
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 30 1.0
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 1.8
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 1.8
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 1.8
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 2.3
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 28 3.1
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 4.0
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 28 4.0
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 27 5.3
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017) 27 5.3
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 27 5.3
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 27 5.3
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 27 5.3
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 27 5.3
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 27 5.3
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 27 5.3
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 214 bits (522), Expect = 3e-56
Identities = 98/122 (80%), Positives = 106/122 (86%)
Frame = -2
Query: 446 SXRYKLIGGLAVRRACYGVLRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 267
S RYKLIGGLAVRRACYGVLRFIME GA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P
Sbjct: 104 SLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEP 163
Query: 266 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPT 87
YV+TA RHV LRQGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE VP +PT
Sbjct: 164 TTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPT 223
Query: 86 SE 81
SE
Sbjct: 224 SE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 35.5 bits (78), Expect = 0.020
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = -1
Query: 189 VAVGPARQERPEEATTRPHPGDRAQGRARA 100
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 177 PARQERPEEATTRPHPGDRAQGRARA 100
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 177 PARQERPEEATTRPHPGDRAQGRARA 100
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 1.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 339 WQAAWSTCQINEVCRWTHDPLW 274
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 24 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 110
+LS +GD +R GRE HF + HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 345 CIWQAAWSTCQINEVCRWTHDPLWRP 268
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 216 STRNQGQNHVAVGPARQERPEEATTRP 136
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRA 106
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 219 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGDRAQGRARA 100
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 82 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 177
S+ S G GSSLGS+ R W P W
Sbjct: 215 SIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 27.9 bits (59), Expect = 4.0
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 353 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG-VLGIKVKIMLPWD 177
E + S + R++ MK + GL + CN+ +T VL + G +L K +I W
Sbjct: 236 EEIASEAEKAARSQHMKTLYGL---TKKLCNERPRHSTA-VLDKDGNLLSKKEEIQRRWT 291
Query: 176 QQGKNGPKKPQPDHILVTEPKDE 108
+ + K+ QPD+ + EP+DE
Sbjct: 292 EHFREVLKREQPDNPI--EPEDE 312
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 177 PARQERPEEATTRPHPGDRAQGRARA 100
P R PE TRPHPG GR A
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLA 210
>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 356 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 183
CE + + KL+ +K+ + G + D C+ ++N + Q LGIK+ L
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195
Query: 182 WDQQGKNGPKKPQP 141
W KK P
Sbjct: 196 WGNHIDKFCKKAGP 209
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 209 GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 72
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 820 AARDARITSPEPPATRPHPGRVEAGRRLA 848
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
Length = 339
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 326 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 192
G++ ++ IH G P DY + L R+GV G+ V I
Sbjct: 25 GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 168 AARDARITSPEPPATRPHPGRVEAGRRLA 196
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 174 ARQERPEEATTRPHPGDRAQGRARA 100
AR PE TRPHPG GR A
Sbjct: 604 ARVTSPEPPATRPHPGRVEAGRRLA 628
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 386 AARDARITSPEPPATRPHPGRVEAGRRLA 414
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 162 RPEEATTRPHPGDRAQGRARA 100
RPE TRPHPG GR A
Sbjct: 546 RPEPPATRPHPGRVEAGRRLA 566
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 425 AARDARITSPEPPATRPHPGRVEAGRRLA 453
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 284 AARDARITSPEPPATRPHPGRVEAGRRLA 312
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 174 ARQERPEEATTRPHPGDRAQGRARA 100
AR PE TRPHPG GR A
Sbjct: 1351 ARITSPEPPATRPHPGRVGAGRRLA 1375
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 174 ARQERPEEATTRPHPGDRAQGRARA 100
AR PE TRPHPG GR A
Sbjct: 181 ARVTSPEPPATRPHPGRVEAGRRLA 205
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 186 AVGPARQERPEEATTRPHPGDRAQGRARA 100
A AR PE TRPHPG GR A
Sbjct: 781 AAHDARITSPEPPATRPHPGRVEAGRRLA 809
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 174 ARQERPEEATTRPHPGDRAQGRARA 100
AR PE TRPHPG GR A
Sbjct: 792 ARITSPEPPATRPHPGRVEAGRRLA 816
>SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -2
Query: 260 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 108
++++ HVLL + + I+ K+ + D+ GP+ Q +++ K E
Sbjct: 142 EWISPPREHVLLAKQSIEIETKVWIAIDRISNIGPRTVQEENLQTQNEKFE 192
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 82 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPC 174
S G GT S+G +W GCGF L C
Sbjct: 63 SPTGILGTTQSIGLSLMVWFGCGFLA-LLAC 92
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 158 PKKPQPDHILVTEPKDEPVPLEPTSE 81
P+ P P T P P PL P+SE
Sbjct: 295 PRTPTPSPPTPTPPPRSPTPLHPSSE 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,995
Number of Sequences: 59808
Number of extensions: 276111
Number of successful extensions: 826
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -