Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B12f
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.089
SB_24194| Best HMM Match : RyR (HMM E-Value=5)                         31   0.36 
SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)                    31   0.48 
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   28   4.4  
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                27   5.9  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5)            27   7.7  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      27   7.7  

>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 127 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 240
           YD +   K   VH+DD E Y N+      Y+ +D Y+D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDD 673


>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
          Length = 211

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 142 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASK 306
           ++KN+  +F+++ R NNI          + + D  + +   +K  +GF N+E  +
Sbjct: 97  RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVEIER 151


>SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)
          Length = 206

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 142 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIE 297
           ++KN+  +F+++ R NNI          + + D  + +   +K  +GF N+E
Sbjct: 97  RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVE 148


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 323 RSNNDCLLASMLLNPYVFFKSLMILMIWSSYLSKDSYPVLMV 198
           RSNN  L+   L  P     + ++ M W   LSKD  PVL+V
Sbjct: 820 RSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLV 861


>SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 378 YRTMLPARRNRVSHLRC 428
           Y+TM+  +RNR+SH+ C
Sbjct: 141 YKTMISGQRNRISHIAC 157


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 95  PTRNTLTSVMCLLFRLSI 42
           PTRNT+ S++C+L+ +SI
Sbjct: 912 PTRNTIISIICILWGISI 929


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195 PHHQD-WV*ILRQIRGPNHQYHQRLEKYIWIQQHRSQQ 305
           P  +D WV +++Q     H+  Q++ K++ + Q RSQQ
Sbjct: 698 PESKDGWVYVVQQRTARQHELPQQMGKWVPLTQTRSQQ 735


>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 67  ITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIK 207
           I DVK  L G     P P+     + + +   HFD +E++ + PTIK
Sbjct: 57  IEDVKR-LCGAKKGPPLPLRKKLLISMDDVPDHFDSREQWPHCPTIK 102


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 24/103 (23%), Positives = 41/103 (39%)
 Frame = +1

Query: 103 SKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYG 282
           SK   P      +K K    HF DKE+ +++ T K   ++    +D   ++ + +K    
Sbjct: 77  SKVKDPRRNGRSVKAKTTKAHFTDKEKTDHLKTNKKSRKNETPEKDSSENVKSPIK---- 132

Query: 283 FNNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIGRCFLLDAIE 411
              +  S Q       +PG    L     +  +G C LL+  E
Sbjct: 133 -CELSESIQHSNTKSRKPGKSSDLSAVPKQELLGTCLLLEEKE 174


>SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5)
          Length = 167

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
 Frame = +1

Query: 178 ERYNNIPTIKTGYESFDKYEDQIISIINDLKNT------------YGFNNIEASKQSLFD 321
           ERY    T++   ESFD++ +++   I   K T            +G NN +  ++ L +
Sbjct: 94  ERYLYFCTVQEPSESFDRFVNRLRDHIATCKYTTLENEMLRDRIVFGVNNSDTRERLLRE 153

Query: 322 LPVRPGAIKHL 354
             +RP + KHL
Sbjct: 154 KKIRPRSNKHL 164


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 354 GLRYW*TVYRTMLPARRNRVSHLRCD 431
           G RYW T YR++         H RCD
Sbjct: 420 GRRYWRTCYRSLEHGWNGTTFHRRCD 445


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 201 GGDVIVAFLVVEVYVGVFQFEVSVIQDRIWIFGGMSYKEHFDV 73
           GGD ++  L +  +V     +  VI DR WI      +++FDV
Sbjct: 547 GGDAMIMMLTIMGFV--VGNDADVIDDRRWIMMACDGEDNFDV 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,202
Number of Sequences: 59808
Number of extensions: 320873
Number of successful extensions: 1154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)