Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B01f
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   2e-33
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   2.0  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    28   4.5  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.5  
SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  138 bits (335), Expect = 2e-33
 Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
 Frame = +2

Query: 113 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 283
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 284 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 384 FTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVV 205
           +TK +L  H +I +   P  C   PY  C     +  N  +HART     +++ERP    
Sbjct: 583 YTKTELRQHVRIHTGEKPYKC---PY--CDKAFAVKGNCTVHART-----HTKERPYKCT 632

Query: 204 SVLRPFRC 181
           +  R F C
Sbjct: 633 NCGRAFSC 640


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 314  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 454
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 52  VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 222
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -1

Query: 297 STTVPLHA---NSFLHART--IFFRSYSEERPCTVVSVLRPFRC 181
           STTV +H    N+ LH R   I+ R+Y+ + P   +S   P RC
Sbjct: 254 STTVAVHKDARNADLHTRVTLIYRRAYNADLPTRTMSEGAPMRC 297


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 109  ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 14
            +C+E +D H ++  +  FQ     L T  Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212


>SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 219 PCTVVSVLRPFRCWIRTWTKP 157
           P + + +  P +CW R W KP
Sbjct: 161 PRSRIPLKNPLKCWYRNWLKP 181


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152 QDGLVHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNG 286
           QDGLV  R+ Q NGR   T +  L    YD +++    K+     G
Sbjct: 760 QDGLVSYRVSQGNGRSDGTGLGDLRDVGYDGRRLAYGTKRGVLSGG 805


>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 268 LLACPHDLLQVIFRGKALHRSQ 203
           ++ C H+LL++  RGK  H+SQ
Sbjct: 518 VIQCLHELLELTLRGKQDHQSQ 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,569
Number of Sequences: 59808
Number of extensions: 308128
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)