Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0040.Seq
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              124   3e-29
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           31   0.19 
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.45 
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     26   7.3  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    26   7.3  
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   7.3  
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  124 bits (298), Expect = 3e-29
 Identities = 58/100 (58%), Positives = 70/100 (70%)
 Frame = +3

Query: 48  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 227
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 228 DVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
           DVVYNASNN     + L +  +          WYE+HY +
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAI 103


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = +3

Query: 108 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 251
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFAN 84


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 24  RATGGKRAPIRKKRKYELGRPAANTRLGP 110
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 21  RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 158
           RR  GG R+P  + R+    R     R  P      RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149


>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -3

Query: 195 IPKRSYRCPDAAHGT*YFHHVNERSGYAEDRAWCLQRDALTHTSSSC 55
           + K +   P A +G     H+ +    +E   WC    + TH+   C
Sbjct: 201 VMKAASPAPRACYGCGQTSHIRDCPKKSETTKWCNYHKSSTHSDGEC 247


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 85   PLQTPGSVLSVSTPFVHVVEILSTVRCVWTPVTS 186
            PL T  ++ S S  F     ++ T+   WTP T+
Sbjct: 1114 PLYTTANISSTSPSFAPNDTLIQTLNSSWTPATT 1147


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 135  RGGNTKYRALRLDTGNFS 188
            +GGN +YR +  DTG FS
Sbjct: 1647 QGGNVEYRIVSPDTGKFS 1664


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  VWAHVSHRWPFAYASDPD 1
           +W H S+RWPF  ++  D
Sbjct: 461 IWHHGSYRWPFDVSASRD 478


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 85  PLQTPGSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 210
           P ++P   L  +TP VHVV +    R V   +TS+  +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673


>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 138 GGNTKYRA--LRLDTGNFSWGSECSTRKTRIIDVVYNASNNNWCVQR 272
           GG+ KY+   +    G+ +W S  S R T  IDV Y   +   C  +
Sbjct: 91  GGHEKYKTHVIISKDGSSAWFSPASFRSTCKIDVTYFPFDEQTCYMK 137


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 256 IGAYKDPCQECNXCSRCNSI 315
           I  Y DP  EC  CS+C+ +
Sbjct: 210 IELYTDPYAECVTCSQCDGV 229


>SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 140 WKY*VPCAASGHR*LLLGIGMFNS-QNPY 223
           W    P  A G R +L GIG+FNS  NP+
Sbjct: 282 WVASFPNPADGPRLVLYGIGLFNSICNPF 310


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 77  RASRCKHQARSSAYP 121
           R++RC+H+ARS  YP
Sbjct: 27  RSNRCRHKARSLWYP 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,605,226
Number of Sequences: 59808
Number of extensions: 278994
Number of successful extensions: 681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)