Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0028.Seq
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             55   1e-08
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      51   2e-07
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   2e-05
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)                    26   8.5  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = +1

Query: 160 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           DKEE V  AKLAEQAERYDDM  +MKEV + G+ L+T       +  +  + ARR+
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRA 58


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 34/63 (53%)
 Frame = +1

Query: 139 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCA 318
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L         +  +  V A
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62

Query: 319 RRS 327
           RRS
Sbjct: 63  RRS 65


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E    L+        +  +  V  RRS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRS 138


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNL 264
           M   + ELVQ AKLAEQ ER++D+   MK+  E   +L
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSL 223



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ E RNLLSV YKNV
Sbjct: 223 LNKEHRNLLSVGYKNV 238


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L  EERNLLSVAYKNV
Sbjct: 15  LEQEERNLLSVAYKNV 30


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 105 LPTRASVN*FSSIVHDVRRQGRTGA--TCQIGRTS*AI*RHGGRDEGSDGNRVXLSNEER 278
           +P RAS    SS +HD  R+GRT A  T  + R S    R GG   G+ G     S+ E 
Sbjct: 665 IPERASRRHASSALHDSLRRGRTTAFLTESLCRRS-CTARGGGCPYGAFGAMDSSSDSET 723

Query: 279 NLL 287
            +L
Sbjct: 724 EVL 726


>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
          Length = 572

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 218 SSYRSACSANLARCTSSSLST 156
           SS  SA S++L+ C+SSSLS+
Sbjct: 209 SSLSSASSSSLSSCSSSSLSS 229


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 95   HFSPSDKGISELVLFHRPRC--PSTRKNWCN 181
            H +PS     E+V +H P C  PS++K  C+
Sbjct: 1251 HVNPSQLKCVEMVDYHFPGCNHPSSKKKKCS 1281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,864,875
Number of Sequences: 59808
Number of extensions: 183925
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)