SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0016.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                114   2e-26
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   6e-17
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 83   6e-17
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 62   2e-10
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 56   8e-09
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)       52   1e-07
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   9e-06
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           46   1e-05
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)            45   3e-05
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           36   0.016
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     34   0.049
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.20 
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.20 
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.20 
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_8819| Best HMM Match : I-set (HMM E-Value=0)                        29   1.8  
SB_31331| Best HMM Match : Thioredoxin (HMM E-Value=1.2)               28   2.4  
SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)                     26   9.8  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score =  114 bits (275), Expect = 2e-26
 Identities = 51/86 (59%), Positives = 67/86 (77%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
           APEYAKAA +L  E+S IKLAKVDAT E  L E + V+GYPT+KFF++G P +Y+GGR A
Sbjct: 60  APEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKPSEYAGGRTA 119

Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
            +I+SWL KKTGPPA ++ +A+  K+
Sbjct: 120 PEIVSWLNKKTGPPAKDLATADAMKD 145



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = +2

Query: 38  EEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGSPIDYSGGRQADDIISWLK--- 205
           ++ + I +AK+D+T  +   E   V  +PT+K+F + G  +DY+GGR  DD + +L+   
Sbjct: 432 KDHADIVVAKMDSTANE--VEGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLESGG 489

Query: 206 KKTGPPAVE 232
           K    PA E
Sbjct: 490 KAGNEPAAE 498



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 283 VFGFFSDQSSSRAKTFLSTXXVVDDQVFAI 372
           V GFF+D+ S  AK FLS    +DD  F I
Sbjct: 153 VVGFFTDKESDAAKAFLSAADGIDDVEFGI 182


>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 83.4 bits (197), Expect = 6e-17
 Identities = 35/73 (47%), Positives = 50/73 (68%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
           APEYAKAA K+   + P+  AK+DAT   D+A+ + V GYPTLK FR G+P +Y G R+ 
Sbjct: 97  APEYAKAAKKMKLNDPPVPFAKMDATVASDIAQRFDVSGYPTLKIFRKGTPYEYEGPREE 156

Query: 182 DDIISWLKKKTGP 220
             I+ ++KK++ P
Sbjct: 157 SGIVEYMKKQSDP 169



 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 38/86 (44%), Positives = 55/86 (63%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQA 181
           APEY KAA +L + + PI LA VDAT E +LA+ Y V+GYPTLK FR G   +Y G R  
Sbjct: 212 APEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATEYKGQRDQ 271

Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
             I S+++ + GP +  ++S +  ++
Sbjct: 272 YGIASYMRSQVGPSSRILSSLKAVQD 297



 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGR 175
           P + K       +++ I +AK+DAT   D+  +Y V G+PT+ F  +    +PI + GGR
Sbjct: 561 PTFKKLGKHFRNDKN-IVIAKIDATAN-DVPSTYAVEGFPTIYFATSKDKKNPIKFDGGR 618

Query: 176 QADDIISWLKKKTGPPAVEVTSAEQAKN 259
           +  D+I ++++K    A    S E+AK+
Sbjct: 619 ELKDLIKFVEEK----ATVSLSKEKAKD 642


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 83.4 bits (197), Expect = 6e-17
 Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQE-QDLAESYGVRGYPTLKFFRNGS-PIDYSGGR 175
           APEY  AA  L + + P+ LAKVD T+  +D    YGV GYPTLK FRNG    DY G R
Sbjct: 574 APEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDGPR 633

Query: 176 QADDIISWLKKKTGPPAVEVTSAE 247
            +  II ++KK+ GP +VE+ S +
Sbjct: 634 DSSGIIRYMKKQAGPSSVEIKSVD 657



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 YGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTG 217
           +G+  +PTLK FR G P  DY+G +    + S++  + G
Sbjct: 448 FGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLG 486


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS--PIDYSGGR 175
           AP Y +      +  S + +AKVDA  ++DL   + V+G+PT+K+F  GS  P +Y+GGR
Sbjct: 58  APTYEQLGEAYTQS-SDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGR 116

Query: 176 QADDIISWLKKKTG 217
             +D I ++++KTG
Sbjct: 117 DINDFIKFIEEKTG 130


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNG-----SPIDYS 166
           APE+AKAAT+L   +  +K+  +DAT     A  Y V+GYPT+K F  G     S  DY 
Sbjct: 116 APEWAKAATEL---KGKVKVGALDATVHTVTASRYQVQGYPTIKVFAAGIKNSHSVEDYQ 172

Query: 167 GGRQADDIISWLKKK 211
           GGR A DII +   K
Sbjct: 173 GGRTASDIIQYALDK 187



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 86  QDLAESYGVRGYPTLKFF--RNGSPIDYSGGRQADDII 193
           Q +   Y +RG+PT+K F     SP DY+G R A  I+
Sbjct: 5   QSVGGPYNIRGFPTIKIFGANKNSPQDYNGQRTAQGIV 42


>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
          Length = 271

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGS-PIDYSGGRQA 181
           P+Y KAA    ++ + +  AK+D T+  D+ +   V GYPTL+++  G   ++Y G R  
Sbjct: 184 PKYEKAAETFKDQPNRV-FAKLDCTKFGDVCDKEEVNGYPTLRYYLYGKFVVEYDGDRVT 242

Query: 182 DDIISWLKKKTGPPAVEVTSAEQAKN 259
           +D+IS++++    P  ++   +Q KN
Sbjct: 243 EDLISFMEEPP-LPLSDIPKDQQEKN 267



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
           P Y KAA  L +E++   LA VD T+ +D+A+   + GYPT+K ++  +    +   +  
Sbjct: 87  PNYYKAAQVLHDEDANCNLAAVDCTKHKDVAKKVALAGYPTVKLYKASNTAKAASAEEDS 146

Query: 185 DIISWL 202
            ++  L
Sbjct: 147 SLVKQL 152


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
           PEY KAA     +  P+    VD T    L   Y +R YPT   + N  P  + G   A 
Sbjct: 322 PEYRKAARSFVGK--PVGFGTVDCTVHSQLCHQYNIRSYPTTILYNNSQPHQFIGHHNAL 379

Query: 185 DIISWLK 205
           DII +++
Sbjct: 380 DIIEFVE 386



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 2   APEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFF 139
           AP+Y + A  L   +  ++ AKV+  Q+  L     +  YPT++ +
Sbjct: 470 APKYEQLAKML---KGKVRAAKVNCEQDYGLCSEANIHSYPTVRLY 512


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/68 (29%), Positives = 38/68 (55%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQAD 184
           P +     + ++E+  + +AKVD T + +L     +R YPT+K + +G    Y+G R A+
Sbjct: 3   PAWEALGEQYSKEKRDLTIAKVDCTSDVNLCVKQNIRAYPTMKLYYDGDIKRYTGRRNAE 62

Query: 185 DIISWLKK 208
           D+  ++ K
Sbjct: 63  DMKVFVDK 70



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 110 VRGYPTLKFFRNG-SPIDYSGGRQADDIISWL 202
           + GYPTL  F++G    +YSG R  D +  ++
Sbjct: 146 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177


>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
          Length = 386

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +2

Query: 5   PEYAKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPT 127
           PEY  AA  L E+E P  LA VDAT+E  L + + V GYPT
Sbjct: 119 PEYVDAAQTLKEQEIPGVLAAVDATKEAALGKRFKVEGYPT 159



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 53  IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWL-KKKTGPP 223
           I  A VD T+E  + + +GV GY    F    +   Y+ GR+A D I ++   + GPP
Sbjct: 268 IAYAAVDCTKEMAVCQQFGVEGY----FNYGKNDFKYTSGREAKDFIQFMDDPREGPP 321


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 14  AKAATKLAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
           A   T L+ +   +   KVD  Q Q  AES G+R  PT  F+ N + ID
Sbjct: 47  APVFTNLSMKFMDVVFLKVDVDQCQLTAESCGIRAMPTFHFYHNKAKID 95


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 32  LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKK 211
           L+E+       K+D    Q+LA   GV   PT +FF+N   +D   G     +   +KK 
Sbjct: 52  LSEKYKQAVFLKIDVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKW 111

Query: 212 TG 217
            G
Sbjct: 112 IG 113


>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 YGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTG 217
           +G+  +PTLK FR G P  DY+G +    + S++  + G
Sbjct: 251 FGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLG 289


>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 32  LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPID 160
           +AE++  + LAKVD     +LA ++GV   PT+   + G  I+
Sbjct: 17  IAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVIN 59


>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 32  LAEEESPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDY 163
           +AE++  + LAKVD     +LA ++GV   PT+   + G  +++
Sbjct: 63  IAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVMEH 106


>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 110 VRGYPTLKFFRNG-SPIDYSGGRQADDIISWL 202
           + GYPTL  F++G    +YSG R  D +  ++
Sbjct: 1   INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32


>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1789

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 56   KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 157
            KL  V  T+E D   +  V G P  T+K+F++G P+
Sbjct: 1042 KLQPVQVTEEDDCKLTCKVSGLPEPTIKWFKDGEPV 1077



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 56   KLAKVDATQEQDLAESYGVRGYP--TLKFFRNGSPI 157
            KL  +  T+E +   +  V G P  T+K+F++G P+
Sbjct: 1331 KLQPIQVTEEDECKLTCKVSGLPEPTIKWFKDGEPV 1366


>SB_31331| Best HMM Match : Thioredoxin (HMM E-Value=1.2)
          Length = 214

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 53  IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSG 169
           + +A V+  +E +LA+  GV+    +  F  G  ++Y G
Sbjct: 104 VTVAAVNVAEEYELAQKLGVKFSGAISVFHRGKRVEYYG 142


>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
          Length = 146

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DANTXIVFGFFSDQSSSRAKTFLSTXXVVDDQVF 366
           DAN  I F   S QSS +   F++T   + D ++
Sbjct: 9   DANNSIGFEVGSSQSSGQTSAFITTLCQLKDAIY 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,204,512
Number of Sequences: 59808
Number of extensions: 165016
Number of successful extensions: 492
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -