Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0013.Seq
         (269 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   1.0  
SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                27   3.1  
SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5)                       26   4.1  
SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 114  YIISXAVYVLAGLLTLFHAFKKGGRWSXFWLGTVL 218
            Y ++ AV + +G  T+F++ + G   S  WL ++L
Sbjct: 1577 YFLAFAVVITSGAFTIFYSMQWGTEISNQWLSSML 1611


>SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 244 PXXICEIPXSTVPSQKXDHLPPFLKA*NNVKRPAKT 137
           P    + P S +PS+  +H  PF  A   ++RP+ T
Sbjct: 34  PSVTLQQPYSVLPSRYTNHTAPFRHATTTIQRPSLT 69



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 217 STVPSQKXDHLPPFLKA*NNVKRPAKT 137
           S +PS+  +H PPF  A    +RP+ T
Sbjct: 107 SVLPSRYNNHTPPFRHATTTTQRPSVT 133


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 244 PXXICEIPXSTVPSQKXDHLPPFLKA*NNVKRPAKT 137
           P    + P S +PS+  +H  PF  A   ++RP+ T
Sbjct: 201 PSVTLQQPYSVLPSRYINHTAPFRHATTIIQRPSVT 236



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 244 PXXICEIPXSTVPSQKXDHLPPFLKA*NNVKRPAKT 137
           P    + P S +PS+  +H  P   A   ++RP+ T
Sbjct: 169 PSVTLQQPYSALPSRYNNHTAPLRHATTTIQRPSVT 204



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 244 PXXICEIPXSTVPSQKXDHLPPFLKA*NNVKRPAKT 137
           P    + P S  PS+  +H P F  A  + +RP+ T
Sbjct: 105 PSVTLQQPYSVHPSRHNNHTPSFRHATTSKQRPSVT 140


>SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5)
          Length = 421

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 223 PXSTVPSQKXDHLPPFLKA*NNVKRPAKT 137
           P S +PS+  +H  PF  A   ++RP+ T
Sbjct: 189 PHSVLPSRYNNHTAPFRHATTAIQRPSVT 217


>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  KQLWAAQPTYIISXAVYVLAGLLTLFHAFKK 179
           +++W  +PT+++   V++L   +T  H   K
Sbjct: 19  QEIWREEPTFLMCEIVFLLIAAMTFRHETPK 49


>SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1419

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  KMETTRAEMETWLDXXRPKK*HQAIVGCPTYIYN 121
           ++E    ++ETWL+  + +   +A VG P  I N
Sbjct: 33  RLENDMTKLETWLEETKTEAKRRADVGFPDDIDN 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,391,750
Number of Sequences: 59808
Number of extensions: 95869
Number of successful extensions: 354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)