Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0010.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.068
SB_15761| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_32522| Best HMM Match : 7tm_1 (HMM E-Value=0.00091)                 28   3.4  
SB_40245| Best HMM Match : GRIP (HMM E-Value=9.1)                      27   5.9  

>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 407 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGI 297
           F+ L NPARV+  QLK +++ + + + PLK + +  +
Sbjct: 632 FQTLENPARVLPLQLKVISLPDDNRYQPLKSVRLDSV 668


>SB_15761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 293 MLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNI 183
           ++N+ G+G + +VS LP    R RKR   +L+SL+++
Sbjct: 232 VVNNFGQGLREMVSDLPDRVSRTRKRLVSSLKSLISL 268


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 314 ITIGGIVMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLN 186
           +T  G+V LNH   G+  +  RL     RQ K+R   +Q+  N
Sbjct: 138 LTFAGVVDLNHPNSGQDSMRERL--EKWRQEKQRKREVQNTAN 178


>SB_32522| Best HMM Match : 7tm_1 (HMM E-Value=0.00091)
          Length = 603

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 296 VMLNHTGEGEQVLVSRLPHSARRQRKRRSLNLQSLLNIWMIDVLLSNCNCHRNRVN 129
           VM NH   G   ++        R R + +LNL + LN W       N N   N +N
Sbjct: 60  VMCNHKSRGNNFVIGFDRTMHMRSRAKPALNLLAYLNCW------KNTNTSENAIN 109


>SB_40245| Best HMM Match : GRIP (HMM E-Value=9.1)
          Length = 142

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 404 EILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEG 270
           ++L++    + ++   L  V  SGF  L D   G +V +NH G+G
Sbjct: 41  QLLTHEVSKVNKETVALVPVVLSGFLALGDEQRGALVEVNHKGDG 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,253
Number of Sequences: 59808
Number of extensions: 199212
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)