Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           27   6.3  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 24  GFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAG 143
           GF   + D LF    +  +  +IP I++L  DD+K  + G
Sbjct: 849 GFCERNRDVLFKDLIELMQSSDIPFIRTLFPDDVKAEMRG 888


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 195 TVNGKTVSSGGVSELTNDGKP 257
           TVNGK VSS   +  T+ GKP
Sbjct: 651 TVNGKVVSSSSSTISTSSGKP 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,451,783
Number of Sequences: 59808
Number of extensions: 149660
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)