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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0041
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      127   1e-29
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                      125   5e-29
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        97   1e-20
SB_39663| Best HMM Match : ResIII (HMM E-Value=1.1)                    33   0.34 
SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)                   30   2.4  
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       29   4.2  
SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5)               29   4.2  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.7  
SB_11| Best HMM Match : E6 (HMM E-Value=2.2)                           28   9.7  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  127 bits (306), Expect = 1e-29
 Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSMPQ-PGRNMPKIFHVNWFRKDE 181
           +  TAAAE  GK VM DPFAMRPF GYNFG YL+HW ++ + P + +P IFHVNWFR D+
Sbjct: 448 SETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLNLSKDPKKKLPLIFHVNWFRLDK 507

Query: 182 QGKFLWPGFGENSRVLDWILRRCDG 256
              FLWPGFGENSRVL+W+ RR  G
Sbjct: 508 NEHFLWPGFGENSRVLEWVFRRVHG 532



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
 Frame = +1

Query: 274 TPLGYIPRAGALNTENL----SAVDMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEM 441
           +P+G +P+ G+LN + L    +    NE+FSIPKD+WL+E   + KYF +EVG DLP  +
Sbjct: 539 SPVGLLPKYGSLNLDGLKDPVTPEAWNEMFSIPKDYWLEELTELRKYFTDEVGIDLPKAI 598

Query: 442 WDELKS 459
            DEL +
Sbjct: 599 EDELNA 604


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score =  125 bits (301), Expect = 5e-29
 Identities = 54/82 (65%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5   TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSMPQ-PGRNMPKIFHVNWFRKDE 181
           +  TAAAE  GK VM DPFAMRPF GYNFG YL+HW SM + P + +P IFHVNWFR D 
Sbjct: 327 SETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLSMEKDPKKKLPLIFHVNWFRLDN 386

Query: 182 QGKFLWPGFGENSRVLDWILRR 247
              FLWPGFGENSRVL+W+  R
Sbjct: 387 TEHFLWPGFGENSRVLEWVFNR 408



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
 Frame = +1

Query: 274 TPLGYIPRAGALNTENLSAV----DMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEM 441
           +P+G IP+ GALN E +        M ELFSIPK++WL E +++ KYF++E+G+DLP  +
Sbjct: 418 SPVGLIPKQGALNLEQMETPVTPEAMKELFSIPKEYWLDEVESLRKYFQQEIGDDLPKAI 477

Query: 442 WDEL 453
            +EL
Sbjct: 478 SNEL 481


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
 Frame = +2

Query: 5   TRATAAAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSM----PQPGRNMPKIFHVNWFR 172
           +  TAAAE  GK +M DPFAMRPF GYN+G YL+HW SM      P   +P IFHVNWFR
Sbjct: 637 SETTAAAEFKGKAIMRDPFAMRPFFGYNYGRYLEHWLSMADKTKHPNYKLPDIFHVNWFR 696

Query: 173 KDEQGKFLWP 202
            +E+G FLWP
Sbjct: 697 VNEKGHFLWP 706


>SB_39663| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1143

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 272 SAWQGSRRSDARSSLRPESSRRNRARGTYPVHLYGTS*RGRSWAC 138
           S W+GS    +R   R +++R   ARG +P+H  G   + R W C
Sbjct: 298 SLWRGSA---SRYQCRRKNARGEGARGAHPLHKQGDPQKQRVWLC 339


>SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)
          Length = 1248

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 272 SAWQGSRRSDARSSLRPESSRRNRARGTYPVHLYGTS*RGRS---WACF 135
           S W+GS    +R   R ++SR   ARG +P+H  G   +      WAC+
Sbjct: 372 SLWRGSA---SRYQCRRKNSRGEGARGAHPLHKQGDPQKHEGLAVWACY 417


>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 RCSEYGKPKRCRHERA 347
           +CSEYG P+ C  ERA
Sbjct: 196 QCSEYGNPRECEEERA 211


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 ETPLGYIPRAGALNTENLSAVDMNELFSIPKD 366
           E P G++P   ALN   L  +D N+L  +P D
Sbjct: 28  ELPRGFVPEVAALNITTLK-LDFNDLQRLPDD 58


>SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -3

Query: 449 SSHISLGRSSPTSSLKYFSMASDSCSQK----SLGMLNSSFMSTALRFSVFRAPALGMYP 282
           S+ I + ++ P    +Y+S A DSC Q     S+G+ +SS  S  +R S  R  ++G+  
Sbjct: 172 SNLIGIHQAYPKHMREYWSFAKDSCIQDLRVFSIGIRDSSVFSIGIRDS--RVFSIGIRD 229

Query: 281 SGV 273
           S V
Sbjct: 230 SSV 232


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 297 SRYVPQWSLGVAGLPSQRRKIQSKTREFSPKPGQ 196
           S+   Q +  +A  P++R   QS   +F+PKPGQ
Sbjct: 639 SKSSTQNATNIASEPAKREDQQSLAEKFAPKPGQ 672


>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 246  AATGALPRRDSTGVHTESRCSEYGKPKRCRHER 344
            AA+   PRR+ST   T +   E   PK+C+ +R
Sbjct: 931  AASDTTPRRESTKKETVAFTIENSPPKKCKVQR 963


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 253 REPCHAETPLGYIPRAGALNTENLSAVDMNELFSIPKDFWLQESDAIEKYFKEEVGED 426
           R P       GY PR G  ++ +L A   N   S+ +      SD  E   +EE  E+
Sbjct: 312 RRPLRRLGTTGYGPRPGVGHSVSLPAASFNHYLSVMRGTGSGRSDTEETIEEEEENEE 369


>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
          Length = 485

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 120 IDGQCFR*SPKL*PXNGRIANGSCITILP 34
           +  QC R   +  P  G++  G C++ILP
Sbjct: 331 VPSQCLRAPSQKKPVEGKVEEGQCLSILP 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,396,908
Number of Sequences: 59808
Number of extensions: 515826
Number of successful extensions: 1347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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