Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0031
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.083
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   0.58 
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.4  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.1  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   4.1  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              27   4.1  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   5.4  
SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  

>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
 Frame = +3

Query: 87  RCC---NIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHV 257
           +CC   N  HW         RA F   G S  +     T + R    + +C+ +  CC +
Sbjct: 175 KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCRDGYFMTGLYRGNCDQIYCIEMFKCCKM 234

Query: 258 APTP*GDAKHHPFSTSLQDRTFSVLFGIKMHLNF 359
            PTP          T + D T + L  +  +L +
Sbjct: 235 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 268


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 144 RFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHVAPTP 269
           R  +SG+ G+     C + L+ + GR+   T +CC   APTP
Sbjct: 677 RSPVSGHRGQ-FLFVCEATLKAYDGRRPSQTSNCCEKTAPTP 717


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 209
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 102 WHWGSVDSISGSRARFQLSGNSGRKHSR 185
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 102 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 206
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
 Frame = +3

Query: 87  RCC---NIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHV 257
           +CC   N  HW         RA F   G S        T + R      +C+ +  CC +
Sbjct: 79  KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCGDGYFMTGLYRD---EIYCIEMFKCCKM 135

Query: 258 APTP*GDAKHHPFSTSLQDRTFSVLFGIKMHLNF 359
            PTP          T + D T + L  +  +L +
Sbjct: 136 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 169


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 142 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 17
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
 Frame = +3

Query: 87  RCC---NIWH-WGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCH 254
           +CC   N  H WG     S   + F   G S    S   T + R    R HC+    CC 
Sbjct: 126 KCCKPANHPHAWGHCYEQS-VESSFDSEGTSKCNDSYFMTGLYRGSCDRLHCIEKFRCCK 184

Query: 255 VAPTP*GDAKHHPFSTSLQDRTFSVLFGIKMHLNF 359
           +  +P          T + D T   L  +  +L +
Sbjct: 185 MVNSPPALTSLSEVKTRVMDTTMHPLAQLANYLGY 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,574,596
Number of Sequences: 59808
Number of extensions: 210920
Number of successful extensions: 464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)