Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0030
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           28   4.2  
SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_49120| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-08)          27   7.4  

>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 43  CTGVRIP-QAGTNFSNEIRTQQMFTIDFH----GEGITSCNXNQTSKIIICVITGGR 198
           C  + IP ++ TNF +   T    TIDFH    G  +   N +   +I   V T GR
Sbjct: 343 CRALGIPTRSVTNFKSAHDTDSSMTIDFHFDEAGTSMFGMNLSLRDQIFPLVTTDGR 399


>SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 386 GVKWLLEPIDIYNVNAPRTSRYKF*DLSIV-TTATPPFEPKRISAHS 249
           G+ W+++ ID++ V+ P     K+ D  +   +A PP   + I A S
Sbjct: 4   GILWVVQSIDLWLVSRPTEGTMKYSDRHLAGLSARPPDRVELIGAGS 50


>SB_49120| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-08)
          Length = 401

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 234 GGGTYPCGLPRSPTTSDYANYNFAGLIXITR 142
           GG +Y C LPRS    +Y   +  G+  I++
Sbjct: 195 GGVSYGCWLPRSAQAGEYLQVDLRGVKNISK 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,429,861
Number of Sequences: 59808
Number of extensions: 315174
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)