Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0025
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   3e-09
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81)                30   2.6  
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 29   6.1  
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)             29   6.1  
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)         28   8.1  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_7215| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
 Frame = +2

Query: 509 LLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFV-----KTKDLRYY 673
           L  +I  IY + GILGF  GL+P++ G++  L +   + + +NK+F+     + K++  Y
Sbjct: 152 LTSSIKEIYNEHGILGFFAGLVPRIAGEVLSLWMYRSVVFIINKFFLDSEMAERKEVTVY 211

Query: 674 TIPLLTFITSTITYPMVVVSTCM 742
           T  L  +++S  TYP VVVS  M
Sbjct: 212 TTALSQWLSSMFTYPFVVVSNNM 234



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 766 AGNPPAMPNYPSWQVCWRDLMR 831
           AG PPAMP Y  W  C++ + +
Sbjct: 243 AGEPPAMPVYADWVDCFKHMRK 264


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 279 ASQLTSKVIVAVGIDLPE-INDPPNIVTDDEPKVED 383
           AS+   KV V  G+DL + IN+PP   +++E   ED
Sbjct: 563 ASKAQKKVPVPEGLDLDKWINEPPKETSEEEDNAED 598


>SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 60  TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 185
           T+   + +P     K+F PA V A G+AP   P   P+H +T
Sbjct: 325 TDPGIDRVPFRRRSKAFAPAKVHAEGAAPAPSPRMHPAHSMT 366


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 187 NVFQYIKYIKASDGFFGCYRGLSQECLVLSPQVN 288
           N+   ++ I   DGF G YRGL+   L ++P V+
Sbjct: 369 NMVSVLRKIITEDGFKGLYRGLAPNFLKVAPAVS 402


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 730 YHNHWICYCACYKCKQWNRVISKIFSLNKI 641
           ++N ++C C     KQW R  S I+SLN I
Sbjct: 268 HNNPFVCDCKLSWLKQWIRTRSLIYSLNLI 297


>SB_59337| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 480

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 60  TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 185
           T+   + +PS    K+F PA V A G+AP   P    +H +T
Sbjct: 403 TDPGIDRVPSRRRSKAFAPAKVHAEGAAPAPSPRTHAAHSMT 444


>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
          Length = 95

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 509 LLGAIVSIYKDDGILGFLHGLIPKVLG 589
           L+ A   IY+D+G+  F  G +P ++G
Sbjct: 28  LINAFTRIYRDEGMRTFYRGYVPTLIG 54


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 60  TNTCYNNMPSHGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 185
           T+   + +PS    K+F PA V A G+AP   P    +H +T
Sbjct: 621 TDPGIDRVPSRRPSKAFAPAKVHAEGAAPAPSPRTHAAHSMT 662


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 311 GYYYLRCELTCGDKTKHSCDKPL*QPKKPSEAFMYFIYWKTLGNIMAGRPNRV 153
           G + +RC+ T   +T   C     +P     ++ +F+  K L +I+  RPNR+
Sbjct: 594 GRFRIRCQSTGKTETFCKCPGTFTRPYIEPPSYDFFVLNKELEHIIFTRPNRM 646


>SB_26662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 90  HGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 185
           HGI    +P+W    G   +  P W   H IT
Sbjct: 66  HGITVMVSPSWYHRHGITAMESPSWYHRHGIT 97



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 90  HGIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT 185
           HGI    +P+W    G   +  P W   H IT
Sbjct: 108 HGITVMVSPSWYHRHGITAMESPSWYHRHGIT 139


>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
          Length = 242

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 781 PEGCQP*TRTSYCHTGRYHNHWIC 710
           P GC      S CH+  +H  W C
Sbjct: 27  PNGCVTEVHRSRCHSAHHHADWTC 50


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/77 (20%), Positives = 33/77 (42%)
 Frame = -3

Query: 473 HHSN*HNMERVSNNDCYRLHDHVSAS*FDVIFNFGFIIGDDVGRIIDFR*INTDGYYYLR 294
           H S+  ++ R   +  + + + +     +  FN   + G + G  I+   +  D   Y +
Sbjct: 3   HRSSKSSLSRKGKHWSHHVRESIVCKSKEGSFNLKIVGGAEFGEFINIGDLKEDKVVYKK 62

Query: 293 CELTCGDKTKHSCDKPL 243
            +L CGD      +KP+
Sbjct: 63  GKLLCGDVILEINNKPV 79


>SB_7215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 213 KGFGWFLRLLQGLIARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDEPK 374
           KG GW  +++ G     LG+  +  ++S VI A  I    IN+ P  V+   P+
Sbjct: 22  KGNGWTWKVMDGHERACLGIGISFVVSSIVISAKAIHTLVINEEPKRVSKGPPE 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,653,491
Number of Sequences: 59808
Number of extensions: 611395
Number of successful extensions: 1632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)