Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)       32   0.58 
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        28   7.2  
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                   28   9.5  

>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
          Length = 683

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 354 VYGNITSKISFFK*HVTQQHHRRLFE*KVRTPVLNKYLKYNKYINTLSIY-SLHTMLQYD 178
           ++GN+T K+ FFK H+      R     +RT   N+Y +YN  +     Y ++H +  Y 
Sbjct: 305 LHGNVTEKVLFFKKHLVWSTLWRAS--SLRTRARNRYCRYNYDVTERYNYRTIHRI--YS 360

Query: 177 KHFLLSSI 154
           K  ++S++
Sbjct: 361 KLSIMSTV 368


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 402 LNVTYNYCVRWRPSDGVYGNITSKISFFK 316
           ++ +Y++  R+  S+G YGN T K+S ++
Sbjct: 252 VSTSYSHVGRYMASEGGYGNFTFKMSLYR 280


>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +2

Query: 146 SFIIELSKKCLSYCNIVCKEYIDKVLIYLLYFKYLFNTGVRTFYSKRRRWCCCVTCYLKN 325
           S I  + K    +   VC+    ++   LLY +   + G R    +R+R+  C+  +LK+
Sbjct: 158 SVITTMRKAQTRWAGHVCRMSDSRIPKQLLYGE--LSRGSRKVGGQRKRYKDCIKSHLKD 215

Query: 326 EILDVMLPYTPSEGR 370
            I+DV    T +  R
Sbjct: 216 FIIDVSTWETAASDR 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,641,762
Number of Sequences: 59808
Number of extensions: 385661
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)