Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0005
(804 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 146 2e-35
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 38 0.010
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 36 0.029
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18) 36 0.029
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 36 0.029
SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 36 0.051
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022) 33 0.21
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 33 0.21
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20) 31 1.4
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 30 2.5
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 146 bits (354), Expect = 2e-35
Identities = 69/87 (79%), Positives = 76/87 (87%)
Frame = +1
Query: 247 PTYEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI 426
P EH+FGLVNFGNTCY NSVLQAL+FCRPFR+KVL YK +KR KETLLTCLADLF +I
Sbjct: 17 PPNEHFFGLVNFGNTCYCNSVLQALFFCRPFRDKVLSYKPPSKR-KETLLTCLADLFNNI 75
Query: 427 ATQKKKVGSIAPKKFIARLRKEKEEFD 507
A+QKKKVG IAPKKF+ARLRKE E FD
Sbjct: 76 ASQKKKVGVIAPKKFVARLRKENELFD 102
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3
Query: 660 TEPTWVHEIFQGTLTSETRCL 722
TE TWVHE+F+GTLT+ETRCL
Sbjct: 200 TETTWVHEMFEGTLTNETRCL 220
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 507 HYMQQDAHEFLNFLINHINEII 572
+YMQQDAHEFLN+L+N I +++
Sbjct: 103 NYMQQDAHEFLNYLLNTIADLL 124
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 751 AFL*LQVDVGQNTSITHC 804
+FL L VDV QNTSITHC
Sbjct: 231 SFLDLSVDVEQNTSITHC 248
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 197 MGANISQLERDIGSEQFPP 253
MGAN SQLE++IG E FPP
Sbjct: 1 MGANTSQLEKEIGHE-FPP 18
>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI 426
Y GL N G TCY NS+LQ LYF R+ V + +N +++ L +FY +
Sbjct: 280 YVGLKNQGATCYMNSLLQTLYFTCALRKAVYQMPTENDDLGKSVAFALQRVFYEL 334
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALY 324
GLVN GNTCY NSVLQ+LY
Sbjct: 404 GLVNLGNTCYMNSVLQSLY 422
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIAT--- 432
+ GL N G TCY NSVLQ LY RE+V + + ++ L +FY I +
Sbjct: 4 FVGLKNAGATCYMNSVLQQLYMQPGIRERVSPDPSPVCWLPDIVVGFLGSVFYQIQSLFG 63
Query: 433 --QKKKVGSIAPKKF---------IARLRKEKEEFDITCN 519
K+ AP++F +R++++ F+ CN
Sbjct: 64 HLMDSKLQYFAPEQFWKCFKLWGQPVNVREQQDAFEFFCN 103
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 37.9 bits (84), Expect = 0.010
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLF--YSI---AT 432
GL N GNTCY NSVLQ L+ P + ++ KE L +L +SI AT
Sbjct: 697 GLRNLGNTCYMNSVLQCLFNTAPLAAYFVSGAFRDDINKENPLGTSGELAEQFSILVRAT 756
Query: 433 QKKKVGSIAPKKFIARLRKEKEEF 504
+ S++P +F + + K F
Sbjct: 757 NCGRFKSLSPLEFKRLIGRIKTSF 780
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 37.5 bits (83), Expect = 0.013
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKK 441
+ GL N G TCY NSVLQ LY RE VL ++ K+++ + LF +
Sbjct: 4 FVGLKNAGATCYMNSVLQQLYMQPGIREYVLGLD-EDYVEKDSVFYQIQSLFGHL--MDS 60
Query: 442 KVGSIAPKKF---------IARLRKEKEEFDITCN 519
K+ AP++F +R++++ F+ CN
Sbjct: 61 KLQYFAPEQFWKCFKLWGQPVNVREQQDAFEFFCN 95
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 36.3 bits (80), Expect = 0.029
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 RAVPTYEHYF-GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 363
+ P Y F GL N GNTCY NSVLQ L F+++ + +
Sbjct: 205 KLTPMYGPGFTGLRNLGNTCYMNSVLQVLMTLPEFKQRYADLR 247
>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
Length = 457
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKN 372
+ GLVN TCY NS+LQ LY FR + ++N
Sbjct: 206 FVGLVNQAMTCYLNSLLQTLYMTPEFRNAIYNQLSEN 242
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 253 YEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVL 354
Y Y GL N G TCY NSV+Q L+ R+ VL
Sbjct: 1252 YMGYVGLKNAGATCYMNSVIQQLFMIPELRKGVL 1285
>SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFY 420
GL+N GNTC+ N ++QAL R+ L + K T L C L +
Sbjct: 40 GLINLGNTCFMNCIVQALTHTPLLRDYFLSDQHNCKGDAGTCLVCEMGLLF 90
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVL-EYK 363
GL N GNTC+ N+ LQ L+ +PF+ L EY+
Sbjct: 465 GLENLGNTCFMNAGLQCLFVIKPFQRFFLSEYE 497
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 35.1 bits (77), Expect = 0.067
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE 387
GL N GNTC+ NSV+Q L + P ++ Y A + T+E
Sbjct: 117 GLSNLGNTCFLNSVVQVLTYTAP----LVNYLATQEHTRE 152
>SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022)
Length = 340
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL 321
GL+N GNTCY N+ LQAL
Sbjct: 124 GLMNIGNTCYMNAALQAL 141
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 277 NFGNTCYSNSVLQALYFCRPFREKVLEYKAKN 372
N GNTCY N++LQ+L PF + + + N
Sbjct: 608 NLGNTCYMNAILQSLLGIEPFAQDLANKELHN 639
>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/26 (42%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +3
Query: 510 YMQQDAHEFLNFLINHIN-EIILAER 584
Y QQDAHEF+++L++ ++ E++L+++
Sbjct: 819 YQQQDAHEFMHYLMDRLHTELLLSQK 844
>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL--------YFCRPFREKVLEYKAKNK-RTKETLLTCLADLFY 420
GL N GNTC+ NS LQ L YF +E V E N K + ADL
Sbjct: 223 GLANLGNTCFMNSGLQCLSNTMTLTKYFLS--KEYVDELNTDNPLGMKGEIAKAYADLLN 280
Query: 421 SIATQKKKVGSIAPKKFIARLRKEKEEF 504
I + + SIAP++F ++ + +F
Sbjct: 281 QIWSGQS--SSIAPRQFKMQVGRFAPQF 306
>SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)
Length = 379
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 510 YMQQDAHEFLNFLINHINE-IILAERNQSTLKVQKNNSGENVTCNGS--VPHNTEPTWVH 680
+MQQDA EF+ FL++ ++E + + T +V+ ++ N + + + +
Sbjct: 13 FMQQDAQEFMAFLLDGLHEDLNRVLKKPYTEEVEGAGKPDHEVANEAWRRHRSRNDSIIV 72
Query: 681 EIFQGTLTSETRCLTVRRSAVK 746
++FQG L S+ C + ++K
Sbjct: 73 DMFQGQLKSKLTCPVCKTISIK 94
>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK-----AKNKRTKETLLTCLADLFYSIAT 432
GL N GNTCY N+ +Q L + + Y + + E++ L DLF ++
Sbjct: 98 GLNNLGNTCYMNATVQCLRNVPELHDSLTNYSGNLGFGSDIGSPESVTVALRDLFKTMDK 157
Query: 433 QKKKVGSI 456
+ V I
Sbjct: 158 TSEAVPPI 165
>SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL 321
GL N GNTCY N+ LQ L
Sbjct: 57 GLKNLGNTCYLNATLQML 74
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 244 VPTYEHYFGLVNFGNTCYSNSVLQALYFCRPF 339
+P + GL N N CY+N+V+Q L C F
Sbjct: 59 LPQPPAFVGLKNRSNLCYANAVIQVLRNCPGF 90
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLL 396
G++N G TCY S +Q L+ R +L AK +R K +L
Sbjct: 1123 GIINLGATCYMASCIQQLFLMPQARCSIL--NAKVRRLKHGVL 1163
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 516 QQDAHEFLNFLINHINE--IILAERNQSTLKVQKNNSGENV 632
Q+DA EFL+ L+N I+E I+L++ + K + + S E V
Sbjct: 402 QEDAEEFLSCLLNGIHEEMIVLSKLDPPLPKPESHESSEGV 442
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 162 YVRILALISSIEWAQIYHSWKEISGQSSSHLRTLFRISQFWQHLLQQLSVASFIFLSPIQ 341
+++ AL+ + +IYH I + H+ T IS W H L F F IQ
Sbjct: 4571 HLKTFALVIDTTY-KIYHGTDIIDTRLKVHVGTWSHISLVWYHRTHVLVFYCFEFNGSIQ 4629
Query: 342 RESIRVQS 365
R ++ S
Sbjct: 4630 RREYKLAS 4637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,035,632
Number of Sequences: 59808
Number of extensions: 484183
Number of successful extensions: 1060
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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