Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               28   1.8  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   5.4  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.1  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     26   7.1  
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T+  +S  R     +IT G T+   +  GTTA+P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T  + S  R  T  + T G T+      GTTA PI+
Sbjct: 1032 DGTTVLSMSTARTTTASMSTAGTTAAPIITNGTTAAPIT 1070



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T    S  R   + + TGG T+   +  GT A P+S
Sbjct: 1212 QGTTVSPMSMDRTTAVPISTGGTTTAPRSTDGTAAAPMS 1250



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T+   S      + +IT G T+      GTTA PIS
Sbjct: 1781 DGTTAAPMSTDGTTAVPMITNGTTAVPMITDGTTAAPIS 1819


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 69  TSCNKSQTRKITICVITGGRTSCESAR 149
           T+C+K + R  +IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 227 LQRLPHPSNRNALLLHGRNRQ 165
           +QR P P+ RN++ LHG   Q
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQ 50


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 206 SNRNALLLHGRNRQGGGTYP 147
           S+ N+  L  +NR+G GTYP
Sbjct: 724 SSDNSFSLEDKNREGPGTYP 743


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T+   S      + +IT G T+      GTTA PIS
Sbjct: 2692 DGTTAAPMSTDGTTAVPMITNGTTAVPMITDGTTAAPIS 2730



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 60   EGITSCNKSQTRKITICVITGGRTSCESARVGTTALPIS 176
            +G T+   S      I +IT G T+      GTTA P+S
Sbjct: 2296 DGTTAATISTDGTTAIPIITDGATAAPMNMDGTTAAPMS 2334


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  TSCNKSQTRKITICVITGGRTSCESAR 149
           T C++ + R  +IC + GGR  C   R
Sbjct: 245 TDCSEVRCRGNSICKVAGGRARCVPLR 271


>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 179 GRNRQGGGTYPRGLTRGPTTSDYA 108
           G  R+GGG   RG TRG  ++ Y+
Sbjct: 168 GPGRRGGGPVGRGRTRGNRSTPYS 191


>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 80  ITRCYSFTVEVNREHLLSTYFIRKIG 3
           ITRCY+F    ++E +  T+++ + G
Sbjct: 59  ITRCYAFIFIFSKETIDDTFYLNQYG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,494
Number of Sequences: 59808
Number of extensions: 226516
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)