Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30039
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)          86   3e-17
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)           29   3.7  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     29   4.9  
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     28   6.4  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
 Frame = +2

Query: 17  MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 196
           MK  ANLS +F E   ++ER   A  AGF  VE  FP+     +++ A ++AG+    IN
Sbjct: 1   MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59

Query: 197 LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 370
           L  GD   G  G+ ++P ++ EF   L   + YA  +    ++++ G++ +   P+    
Sbjct: 60  LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119

Query: 371 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 550
               NL    +  +   I  ++E IN   +P + ++   +   ++K +  PNL    D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179

Query: 551 HLQQIAGDITHNITKL 598
           H+ +   D+   I  L
Sbjct: 180 HMARQGLDVQAGIVLL 195


>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 233 VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 403
           + SV   E+ ++ +L+ +++ +KA  ++ + +M GK  +PT + W+T   F  N L+  +
Sbjct: 84  ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142

Query: 404 VLKGENI 424
             K  NI
Sbjct: 143 TDKDSNI 149


>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 670 SPGRVRARYDSEPELFAHVPMYGQ*FRNIMSNVASDLLKMKNVQHQSQI-WTVNTFNNVH 494
           +P   + +    P   + V  +G  F+     +  D++  +N Q    +    NTFN+  
Sbjct: 121 TPTNDKHKRSQSPSSTSEVTSFGMAFQK---KLVRDMMMSRNPQQMQNLDHAANTFNDCQ 177

Query: 493 SSSIITQEIFGHRILVDWFD 434
           S +  +  IFGH    DW +
Sbjct: 178 SHTYQSNTIFGH---ADWME 194


>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
          Length = 274

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 568 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 473
           S LL   N  H S++WT    N  H+SS+ TQ
Sbjct: 31  SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 568 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 473
           S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 188 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 488 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 583
           R + ++K+ID+   PN+  +LDIFH+  +    TH
Sbjct: 52  REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86


>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 568 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 473
           S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 155 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 118 RFYSLKSSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 5
           R +S  +   S S S +NG+S + H RQ++  + ++KI
Sbjct: 285 RQHSSATGCSSNSTSRKNGKSSATHNRQMTNGYSHSKI 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,049,388
Number of Sequences: 59808
Number of extensions: 423501
Number of successful extensions: 1204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)