Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30038
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                73   1e-13
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           29   1.8  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 29   2.4  
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)               29   2.4  
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)                 28   4.1  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   9.6  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/54 (57%), Positives = 44/54 (81%)
 Frame = +3

Query: 285 KVSGHKGPEELSXAIKDADVVVIPXGVPREPGMTRDDLFNTNASIVRDIALSIA 446
           +V+ H+GP++L  A++   VV IP GVPR+PGMTRDDLFNTNASIV++++ + A
Sbjct: 55  QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACA 108


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 457 PKLLWPSSQTLLTSTVPYCL 516
           P ++WPS+Q +L STV  CL
Sbjct: 411 PDVVWPSAQPILVSTVSDCL 430


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +3

Query: 177 ALLLKQNPLVTRLALYDIAPVT-PGVAADLSHVNTPAKVSGHKGPEELSXAIKDADVVVI 353
           A ++  +P VT L   + A  T  GV   L+  +TP +      PE+     +D DV+VI
Sbjct: 563 AQVIASSPNVTVLVKDEPADATRDGVKRPLTDTSTPTQP-----PEKKGRPNQDNDVIVI 617

Query: 354 PXGVPREPGMTRDDLFN-TNASIVRDIA 434
               P +P     +L N  + +IV++I+
Sbjct: 618 DPPSPPKPRTIPSELANGLDKAIVKEIS 645


>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 324 AIKDADVVVIPXGVPREPGMTRDDLFNTNASIVRDIALSIAXNA-PKAIVAIITNPVNF 497
           A KDA VVV+  G     G  + +   ++A + RD   ++  +A P   V     P NF
Sbjct: 204 AFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAHAKPDCKVLTAGGPANF 262


>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
          Length = 606

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 225 DIAPVT--PGVAADLSHVNTPAKVSGHKGPEELSXAIKDADVVVIPXGVP 368
           D +PVT  PG++++    + P      K P E S A  D     IP   P
Sbjct: 555 DSSPVTTQPGLSSEKPEASEPEPAPEPKSPAENSTASNDTSTTAIPLPPP 604


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 236 CDPRR-RSRPFPREHPSQGQRPQGT-*GAIXSHQRC*C 343
           CD    R +P  R  P    RPQGT  GA+  H+R  C
Sbjct: 463 CDSTTVRPQPTDRPRPQTTSRPQGTQCGAVKCHERGVC 500


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 174 KAGRYHRRHQRPPL*SSSVMWWK---SSLHHFVQQ 79
           +  RYH+   + P+ +++ +WW+   + + HF+Q+
Sbjct: 266 RQARYHKWRPKVPVKNNAKLWWQFASTCILHFIQE 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,451
Number of Sequences: 59808
Number of extensions: 353178
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)