Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30026
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   3.1  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 26   5.4  
SB_47771| Best HMM Match : Annexin (HMM E-Value=0)                     26   5.4  
SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)                   26   5.4  
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)           26   5.4  
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 26   5.4  
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         26   5.4  
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)                  26   5.4  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    26   5.4  
SB_4338| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)                     26   5.4  
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_2999| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                  26   5.4  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               26   7.2  
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 216 FTADNYREVTQVTLLSKRLER 278
           F   NYR +T V  LSK LER
Sbjct: 60  FIYPNYRPITNVAFLSKTLER 80


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 214  VSPLITTGKLLKSRYYLSD*KDF--KPTHRQHLC 309
            VSP   TGK L   Y++ + KD   KP H +  C
Sbjct: 1051 VSPCTQTGKSLDEDYFVDEPKDLLGKPFHYKSSC 1084


>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 1175

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 480 NYRPITNVAFLSKTLER 496


>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 529

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 31  CTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGIQGLIQ-VNL*ARFQIVRSLPPIR 207
           C ++     E +G  HD      +  S L+    +G+ G ++   +    Q +RSL P R
Sbjct: 450 CDILETIDDELTGDYHDAVKAIGMLASVLHGNITFGVAGTLKSPRVILDNQRIRSLDPSR 509

Query: 208 NAVSPLITTG 237
           N   P    G
Sbjct: 510 NDFYPNTNEG 519


>SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)
          Length = 773

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 355 NYRPITNVAFLSKTLER 371


>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
          Length = 549

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 484 NYRPITNVAFLSKTLER 500


>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 145 LVFHIYNQDIESLVLKASSCICHGTHQRTQI 53
           L   I++QD+++  L+A   I  GT ++TQ+
Sbjct: 851 LALLIHHQDLDTAALRAVGNIVTGTDEQTQV 881


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 213 NYRPITNVAFLSKTLER 229


>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228  NYREVTQVTLLSKRLER 278
            NYR +T V  LSK LER
Sbjct: 1206 NYRPITNVAFLSKTLER 1222


>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
          Length = 605

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 279 NYRPITNVAFLSKTLER 295


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 115 ESLVLKASSCICHG 74
           E+L  KASSC CHG
Sbjct: 514 EALKRKASSCFCHG 527


>SB_4338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 98  NYRPITNVAFLSKTLER 114


>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
          Length = 231

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 98  NYRPITNVAFLSKTLER 114


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 98  NYRPITNVAFLSKTLER 114


>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 182 NYRPITNVAFLSKTLER 198


>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 98  NYRPITNVAFLSKTLER 114


>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 98  NYRPITNVAFLSKTLER 114


>SB_2999| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 630

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 NYREVTQVTLLSKRLER 278
           NYR +T V  LSK LER
Sbjct: 187 NYRPITNVAFLSKTLER 203


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +1

Query: 13  NDIKISCTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGIQGL 150
           N I+ SC+  +      S  +H    Y  L  S  YP C  G   L
Sbjct: 176 NQIRTSCSSSSHDYLGSSSLAHGHAMYDSLGSSSRYPQCPPGFNPL 221


>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 172 VPKGSLE*VLVFHIYNQDIESLVLKASSCI 83
           VP+GS+   L+F IY  D+ + +L+ + C+
Sbjct: 78  VPQGSILGPLLFLIYIYDLPNCLLQTTPCM 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,918,061
Number of Sequences: 59808
Number of extensions: 144655
Number of successful extensions: 368
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)