Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 28   6.1  

>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 HRHPVSK-ASQGSPHGIDPQPHSAHTLKLPITDSRLLSILSVGSGM 255
           H+HP S+  ++G+P  ++  P +++ + + IT  R   ++ +GSG+
Sbjct: 333 HKHPSSQNVTEGAPVSLECDPPNSYPIGVAITWFRNYQVVQLGSGI 378


>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   PWTLEIPGAVWRLTPLV*IACANQYCRRSLIGSFVTVHTPPSSVKGVPRFA 158
           P   E+PGAV  ++ +   AC+ +     LIG  +T  T   SV G P  A
Sbjct: 835 PKAPELPGAVPSVSIVTGSACSVRPAASPLIGEMLTTATATVSVNGQPAIA 885


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 147  PRFATWDRSSATLSAHIKIAHYR*STAFHSVRRIGNVVTGGHDER 281
            PRF+T    SA L  H  I  Y  STA+   R  G  +  G D+R
Sbjct: 1519 PRFSTSPGHSADLD-HSTIPGYSASTAYSETRDYGADLDTGSDDR 1562


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 358  SCQIYSVLRSHSSLIVRHCSPYAITFAKFYLN 453
            SC+  +++R+ S+LI R CS + +     Y+N
Sbjct: 947  SCRQQNMMRAFSNLIQRCCSLHTVNLTGLYVN 978


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,059
Number of Sequences: 59808
Number of extensions: 414501
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)