Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30001
         (340 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23192| Best HMM Match : JmjC (HMM E-Value=4.1)                      29   0.96 
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                28   1.7  
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.7  
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   26   9.0  

>SB_23192| Best HMM Match : JmjC (HMM E-Value=4.1)
          Length = 319

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 2   SNSAHRCTDKRKNLCEKKKSHHLYRP 79
           S+SA+  T KR NLC K+K   +Y+P
Sbjct: 268 SHSAYNSTTKRCNLCLKEKLTIIYQP 293


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 216 TG*NISVFAVDSKVKTRNNCGSEKKPKKERQPKMSY*ETP 335
           TG ++       K K ++N   EKKPK+ ++PK S  E P
Sbjct: 473 TGTDVPGAGNPKKDKKKDNKPEEKKPKEAKKPKESKQEKP 512


>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 319  LILGCRSFFGFFSLPQLFLVFTFESTAKTEMFQ 221
            +++G    FGFF++  L L FT+   AKT + Q
Sbjct: 1090 ILVGLTWMFGFFAISTLRLAFTYLFAAKTLVCQ 1122


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 251 RVYGKDRNVSTCRRSDNISTCPKYMRS 171
           R  GK+R++  CR+  + S CP  MR+
Sbjct: 776 RCTGKERSLLQCRQRISQSRCPTNMRA 802


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 28  QKEKSLRKKKITSFISPVFSPGKMTSVSV 114
           + EK +RK   TS +SP+ SP + ++ S+
Sbjct: 111 EDEKQIRKFAFTSKVSPLTSPRRSSTGSI 139


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 250 ESTAKTEMFQPVDGQTTFRR-VQNICVQRLQHLRHFVRNSLINFPW 116
           E +A   +F   D  T  R  ++ +C   L  ++  ++   ++FPW
Sbjct: 590 EESAPPAVFASSDEDTMLRETIETVCQTVLSFVKRTLKKMRLDFPW 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,883
Number of Sequences: 59808
Number of extensions: 160077
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)