Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30038
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)                  71   1e-12
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           29   2.7  
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             29   2.7  
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
          Length = 326

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +2

Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPG 508
           +F++DG TY LA N G + LHGG+ GFNK  W S+++   V  SY S DGEEG+PG
Sbjct: 125 EFTLDGKTYHLAKNNGPNCLHGGLIGFNKVLWQSSIEEDHVKMSYTSHDGEEGFPG 180



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 285 NTPYLGTTVGRCANRI 332
           N PY G+T+GR ANRI
Sbjct: 106 NPPYFGSTIGRVANRI 121


>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 264 LDGYVNRNTPYLGTT---VGRCANRIGGQNSASTARLINSLT--TLGKIIYMAGLMDLIR 428
           LDG+V R+T          GRC+ R+G   S  + R  N +T  TLGK +    + D + 
Sbjct: 383 LDGFVRRSTSSNSVKEGRFGRCSERLGHSFSTQSIREGNCMTNDTLGKSVSTPVIKDSLS 442

Query: 429 R 431
           R
Sbjct: 443 R 443


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 339  QNSASTARLINSLTTLGKIIYMAGLMDLIRRIGIPP 446
            Q S+ T +LI+S +  GK+   AG  D+ R  G PP
Sbjct: 1523 QQSSDTRQLIDSDSDKGKLHPFAGDADISRTFGAPP 1558


>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 178 RXLRSRQMPSM*IL-KPSLHDAVRNPQHSKSPCLLFKTNDSSGHKT 44
           R L   Q+P   I  KP ++ + + PQHS SP  L   N    HK+
Sbjct: 189 RTLSKFQVPLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHKS 234


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 455 YRQRWNSNSPY*IH*SRHVNDLSQCC*RVDKSCRR 351
           Y+Q W ++  Y  H S H++D S CC  +   C R
Sbjct: 672 YKQ-WKNSPAYKRHLSEHMDDKSNCCRVMKLDCVR 705


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,944,688
Number of Sequences: 59808
Number of extensions: 436565
Number of successful extensions: 2409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2407
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)