Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71)            26   6.3  
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71)
          Length = 281

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 114 KSIIDNSKNGVTQNRIISKGNNNES 40
           +S+ID S  G+TQ+ +I KG   E+
Sbjct: 215 QSLIDQSVQGITQDLLIDKGALEEN 239


>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 102 DNSKNGVTQNRIISKGNNNES 40
           DNS N    NR IS  NNN +
Sbjct: 11  DNSDNNSINNRSISNNNNNNN 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,094
Number of Sequences: 59808
Number of extensions: 151770
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)