Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              129   2e-30
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           33   0.15 
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.9  
SB_41278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  129 bits (312), Expect = 2e-30
 Identities = 59/77 (76%), Positives = 66/77 (85%)
 Frame = +1

Query: 31  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 210
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 211 DVVYNASNNELVRTKPL 261
           DVVYNASNNELVRTK L
Sbjct: 64  DVVYNASNNELVRTKTL 80



 Score =  116 bits (279), Expect = 2e-26
 Identities = 55/86 (63%), Positives = 65/86 (75%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 431
           KTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK  AR+
Sbjct: 78  KTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARK 137

Query: 432 RLAKVEGALEEQFHTGRLLACVASRP 509
             AKV   +EEQF TGRL ACV+SRP
Sbjct: 138 ANAKVAPGMEEQFVTGRLYACVSSRP 163



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 22/30 (73%), Positives = 28/30 (93%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 163 PGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/50 (30%), Positives = 32/50 (64%)
 Frame = +1

Query: 91  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNE 240
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKE 86


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   RATGGKRAPIRKKRKYELGRPAANTRLGP 93
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 345 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 482
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_41278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 200 PVSLMLCIMHLTMNWCVQNPCQECNCC-SRCN 292
           P +L  CI+  T+  CV++ CQ  N    RCN
Sbjct: 38  PTTLSYCILRTTVPLCVKHQCQSRNSMRRRCN 69


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 387 KKRSQKTARKYLARQRLAKVEGALEE 464
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +2

Query: 140  VRCVWT-PVTSLGDRNVQLAK-----PVSLMLCIMHLTMNWCVQNPCQECNCCSR 286
            +RC+     TS+G   V +AK     P S  +C++    NW + +  +  N C R
Sbjct: 911  LRCLQDMATTSVGTAGVDMAKVTDGSPESEGVCLLKTITNWLLSHAIRSLNSCPR 965


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,242
Number of Sequences: 59808
Number of extensions: 362032
Number of successful extensions: 1067
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)