Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30017
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         30   1.4  
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  29   2.4  
SB_19394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 44  LLNKALGNISLPQMHPSTVLMDYVPMVTELLNRKIHDVLVNEKLK 178
           L NKA G   +P +       +  P+V EL N  + +V+VN+ ++
Sbjct: 580 LTNKAPGPDGIPALILKMFAFELSPIVAELYNTSLKEVMVNDLIR 624


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 316 IFLEIDPILLLKSNESH*FQMKGSTVYIVFQYGTFIFNNQKC**IPFQFFIDKYIV-YLS 140
           IFLE  P+ L K+N+ H +        +  + G++ F++     + F+ F D  I  Y S
Sbjct: 308 IFLEDTPVNLRKANKFHPYPFIAG---LTSEEGSYFFSDDFFKNVTFETFKDDAITFYQS 364

Query: 139 VQQFG 125
           V++FG
Sbjct: 365 VRRFG 369


>SB_19394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 238 KQCCLSFEINDFHWILTVELGQFPEKSPILTLRSVYHSSKGKPKYKV--LSSCPLNNF 405
           K+  L F+     WI T     FP  SP+       HS  G+P Y +  +S  P+N F
Sbjct: 55  KKIMLDFQRPLGGWIFTKST--FPVSSPVFAYVMFMHSPLGQPVYPLPRISGKPINFF 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,290
Number of Sequences: 59808
Number of extensions: 303930
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)