Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00029
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          85   5e-17
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)                  28   8.3  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         28   8.3  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/57 (70%), Positives = 49/57 (85%)
 Frame = +1

Query: 490 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
           +K+ V IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = +2

Query: 353 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 508
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVD 53


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 247 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 152
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
          Length = 624

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 134 KRGADLXLAEHRRSLDIVPIFASEWVDN 51
           K+GA + LA  RR+LD+V    ++ +D+
Sbjct: 1   KKGAPICLAARRRNLDVVEFLLTQQLDH 28


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 442 EPTQDVLRPAHSGQSNQKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 621
           EPT D  RP+H   ++      I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 622 DVCIRKVKVLKRP 660
              IR+ ++ +RP
Sbjct: 334 SKYIREGRIEERP 346


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -2

Query: 685 SINFEISKRASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 548
           S+   I       L P GC  R  G      S  P + +Q STC P
Sbjct: 444 SVRVTIDGMPKQGLQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRP 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,295,335
Number of Sequences: 59808
Number of extensions: 480915
Number of successful extensions: 1368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)