Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00020
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          78   8e-15
SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)                  29   3.6  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +3

Query: 357 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKM 506
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKM 51



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 494 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
           +K+ V+IITR+V+ ++L+EVVNKLIPDSI KDIEK+  +        IRK K  + P
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +1

Query: 595 EGCHGIYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
           + C  IYPL DV   KVKVLK+P+F+I KLME+HGE
Sbjct: 82  KSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGE 117


>SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 408 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMWKSLHATSLTL 539
           RV        DS+ +RK      T VRAI +++W+S    SL L
Sbjct: 177 RVASYWLVKLDSIKRRKVIDIVRTNVRAILQRVWRSSDVDSLRL 220


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 251 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 72
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 580 NGVRNQLVHHLPEFRVSDVACNDFHI 503
           NG+R+QL H LP   +  ++C+ FHI
Sbjct: 25  NGIRDQLFH-LPAKMLDVISCSSFHI 49


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 55  IVDPFTRKDWYDVKAPSMFSKRQ 123
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,576,383
Number of Sequences: 59808
Number of extensions: 485993
Number of successful extensions: 1413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)