Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00019
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)            105   1e-23
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   29   1.9  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   5.8  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   27   7.7  
SB_28043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       27   7.7  
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)                    27   7.7  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score =  105 bits (253), Expect = 1e-23
 Identities = 49/84 (58%), Positives = 58/84 (69%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY K +  G+KRGLRNQH NT+L+K+EG  +R +  FY GK   +VYRAK +T   G  
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
             K TKLR IWGKVTR HGNSG V
Sbjct: 66  --KATKLRVIWGKVTRAHGNSGVV 87



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 255 RAKFKSNLPAQAMGHRIRVM 314
           RAKF+ NLP +AMG  +RV+
Sbjct: 88  RAKFRHNLPPKAMGATVRVI 107


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 DAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLR 207
           D+ F+AG   +     K   P+ GGPR +  +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 148 RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 252
           R ++R P P  PR       + WG  T   GN+G+
Sbjct: 79  RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGT 113


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 232 PHGNSGSVEPSSSLTSLPRLWDT 300
           P    G+V+P+S ++ LP  W+T
Sbjct: 424 PKSARGNVQPTSQISGLPLTWNT 446


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 252 TARVAMWAG----HLAPDSTQLGFFATGTSGNWC 163
           TA + +W G    HLA D   +  FATG S  WC
Sbjct: 18  TASLNIWEGRAPPHLAVDGVNMSTFATG-STIWC 50


>SB_28043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 292 IAWAGRLDLNLARHCQSCHVGGSPCP 215
           + W+ R+D+    H   C+ G S CP
Sbjct: 46  VTWSKRIDIEGNPHPVQCYQGSSVCP 71


>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 177 RSPWQKNQAACYLGQG 224
           RSPW  N   CY G G
Sbjct: 58  RSPWDYNNYGCYCGMG 73


>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
          Length = 1239

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 183 GTSGNWCPLLSS-VHIDAMLASIKDCIITVFCSFN 82
           G SG    L SS V  D  L+ IKDC+  +FC  N
Sbjct: 733 GISGLLAFLKSSRVMSDVELSKIKDCLTRLFCDPN 767


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,789
Number of Sequences: 59808
Number of extensions: 289164
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)