Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00011
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.9  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   28   3.9  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.9  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   5.1  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   6.8  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 130 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 249
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +1

Query: 175 SRARFQLSGNSGRKHSRCCTSILRKFRAGSIVSQLTAAAM 294
           +++ FQ++G +G++ +  C  ++R+F    + SQL+  A+
Sbjct: 129 AKSFFQVNGKNGQEET--CEDLVREFEGNGLFSQLSLEAL 166


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 WHWGSVDSISGSRARFQLSGNSGRKHSR 225
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 142 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 246
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 182 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 57
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 395  FKCILIPNKTEKVRSC-SDVENG*CLASPHGVGATMAAAVNCDTMLPALNF 246
            + C  IP  T K  +C +D++   CL++P G GAT    VN  T + A+ F
Sbjct: 2734 YACSCIPGFTGK--NCETDLDE--CLSNPCGNGATCRHLVNNYTCICAVGF 2780


>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 64  RREQKLKEHGASSCISGK-RGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 240
           + +Q+ ++ G  +CI    +    CNIWH  ++ ++ G + +       G    R     
Sbjct: 106 KTKQECQKEGYEACIVNTIKSGTYCNIWHIFALSNVVGCQIQSVYPEVVGSLIDR----- 160

Query: 241 LRKFRAGSIVSQLTAAAMVA 300
              F+ G I S++  + MVA
Sbjct: 161 -HTFKNGRITSEVVRSPMVA 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,957
Number of Sequences: 59808
Number of extensions: 242539
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)