Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00008
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      31   1.4  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  

>SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 155 PRTGPRSRPASGPAGTPDSQ*GTAENKP 238
           P + P S+PAS PA  P SQ  +A+NKP
Sbjct: 91  PASQPASQPASQPASQPASQSASAQNKP 118


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 131 RYSPTQGGPRTGPRSRPASGPAGTP-DSQ*GTAENKPS 241
           R SP +  PRT PRS P + P G+P  S  G+    PS
Sbjct: 341 RPSP-KNSPRTSPRSSPFASPTGSPTSSPVGSPAQSPS 377


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 176 ANVDRYGD-RLVWGNNGTVADNPEYYGFIIQPW 81
           A+ D YG+  L   N GT   +P+Y  + IQPW
Sbjct: 701 ASQDPYGNPNLQQVNPGTAVVHPQYAAYSIQPW 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,685,830
Number of Sequences: 59808
Number of extensions: 514055
Number of successful extensions: 1225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)