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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00007
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      31   0.35 
SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)                    30   0.81 
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)                    29   1.1  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   3.3  
SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   27   4.3  
SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)                       27   4.3  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   5.7  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   5.7  
SB_50275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)              27   5.7  
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 26   10.0 
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)                   26   10.0 
SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)          26   10.0 
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)                26   10.0 
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 26   10.0 
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   10.0 

>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 249 QGGPRTSPRSHPASGPAGTPGSR*GTAVGRP 157
           +  PRTSPRS P + P G+P S   + VG P
Sbjct: 345 KNSPRTSPRSSPFASPTGSPTS---SPVGSP 372


>SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)
          Length = 159

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 288 YSGLSATVPLFPTQGGPRTSPRSHPASG 205
           YS L  T  + P+QGG   SPR  P+ G
Sbjct: 46  YSALEQTGKVRPSQGGKEKSPRKQPSVG 73


>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
          Length = 491

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 366 VTWSDVAAVVWDVGGFHCHGWIMKP*YSGLSATVPL--FP-TQGGPRTSPRSHPASGPAG 196
           VT S V A+ W  GG         P   G  AT P+   P   GG  TSP + PA G  G
Sbjct: 150 VTTSPVTALPWVQGGVATSPVTALPWVQGGVATSPVTALPWVHGGVTTSPVTGPAMGTGG 209


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 246 GGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCV 127
           GG  +     P  GP+G+PG   G AV       IN  CV
Sbjct: 478 GGAPSPMGGGPPGGPSGSPGGLSGPAVDECEKCDINAICV 517


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 247  LCGEQRDSRRQPRVLRLHNPAVAVKPSYIPDD 342
            L G +R   RQP   RL  PAV  K S +P++
Sbjct: 1197 LLGNRRFQHRQPSYSRLRAPAVGQKKSDLPEN 1228


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 189 GSR*GTAVGRPPSLGINTRCVSSHWNRSIPRSSCHR 82
           G R     GRPPS+  +    SS+W+ S+ R+   R
Sbjct: 197 GQRATAQEGRPPSVSSDLSVASSYWDPSLTRTRSRR 232


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 270 TVPLFPTQGGPRTSPRSHPASGPAG-TPGSR*GTAVGRPPS 151
           T P      G +TSP   P   PAG T G   G    +PP+
Sbjct: 529 TTPQSMIPPGTKTSPTPKPPGSPAGSTQGPTDGVVSAKPPT 569



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 158 GRPTAVPHREPGVPAGPEAGCERGLVRGPP 247
           G+PTA   + PG P G   G   G+V   P
Sbjct: 495 GKPTAPTPKPPGSPVGVTQGPTEGVVSAKP 524


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
 Frame = +2

Query: 158 GRPTAVPHREPGVPAGPEAGCERGLVRGPPCVG--NNGTVADNPEYYG 295
           G P   P R  G P G      RG  RGPP  G    G   D    YG
Sbjct: 77  GPPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPGPPRRGPPPDRDSGYG 124



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 246 GGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
           G PR  PR HP  G  G P  R G     PP
Sbjct: 73  GPPRGPPRGHPMRG-RGAPYGRGGPPSRGPP 102


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 306 WIMKP*YSGLSATVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
           W +      ++ TV   P   GP  + R    SGP+  PG    T +G  P
Sbjct: 160 WYVAEFIPSITTTVGTKPKPSGPDQTGRKPKPSGPSHNPGDH-ATTLGTKP 209


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 276 SATVPL--FPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
           S+TVPL    T G P ++ RS P   PA  PG R  T+   PP
Sbjct: 367 SSTVPLRQASTTGRPPSAQRSGP---PARAPGQRIVTSSSSPP 406


>SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 276 SATVPL--FPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
           S+TVPL    T G P ++ RS P   PA  PG R  T+   PP
Sbjct: 75  SSTVPLRQASTTGRPPSAQRSGP---PARAPGQRIVTSSSSPP 114


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +2

Query: 158  GRPTAVPHREPGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYGFIIQP 310
            G  T  P R    P  P     RG  R     G++  +  N +  GF+ QP
Sbjct: 1752 GPETEPPRRSRAPPPRPPPPSSRGHSRSGSTAGSSQALTYNQQVIGFLSQP 1802


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +2

Query: 155  GGRPTAVPHREPGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYG 295
            GG+PT  P    GV  GPE    +G  RG P  G    V + PEY G
Sbjct: 992  GGQPTDGPVY--GVLEGPEY---KGTYRGQPTDGPVYGVLEGPEYEG 1033


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 279 LSATVPLFPTQGGPRTSPRSHPASGPAG 196
           +S+T    P +G P+T PRS    GPAG
Sbjct: 472 VSSTYATEP-EGSPKTPPRSQRPDGPAG 498


>SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)
          Length = 99

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 57  KLDVNVDSYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQ 170
           K+ +N  S+   +TW  N    KR    +YP++ G +Q
Sbjct: 31  KVKLNPGSWACEETWQKNSKDIKRAIKGIYPMEEGPKQ 68


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 273 ATVPLFPTQGGPRTSPRSHPASGPAG 196
           A+ P F     P +SP S+PAS  AG
Sbjct: 468 ASYPAFSPASYPASSPASYPASSTAG 493


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 21   FKILNTEHEMYLKLDVNVDSYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLIEN 188
            F I +T+ ++ L   V    +   + W S   + S K++    +P+KVGD  +FL  N
Sbjct: 1072 FTITSTKAQVTLSCAVEHPFFVYGQGWSSCVPEQSLKKYNLQCHPLKVGDVCIFLTPN 1129


>SB_50275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 249 QGGPRTSPRSHPASGPAGTP-GSR*GTAVGRP 157
           +G P  +P   P   P GTP G+  GT  G P
Sbjct: 30  EGAPEGTPEGTPEGTPEGTPEGTPEGTPEGTP 61


>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
          Length = 376

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 249 QGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCV 127
           Q GP+  P     +GPAG  G R       P   G  T+CV
Sbjct: 249 QQGPQGPPGPKGDTGPAGPGGPRGNQGPPGPSGTGDLTQCV 289


>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 PHREPGVPAGPEAGCERGLVRGPPCVGNNG 265
           PH++P VP  P+    R  +  PP   ++G
Sbjct: 244 PHKKPAVPPAPDLSLTRKRMAPPPPTPSSG 273


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +2

Query: 146 PSEGGRPTAVPHREPGVPA----GPEAGCERGLVRGPP 247
           P +GG P    H +PG PA    GP      G  R PP
Sbjct: 216 PLQGGPPQGESHGQPGPPALLQQGPPGPPFHGEPRPPP 253


>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 331 IPDDCRYI*PCYNKFY 378
           + D CRY   CY KFY
Sbjct: 503 VRDGCRYCMECYGKFY 518


>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
          Length = 163

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 331 IPDDCRYI*PCYNKFY 378
           + D CRY   CY KFY
Sbjct: 91  VRDGCRYCMECYGKFY 106


>SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
          Length = 311

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 320 NPPTSQTTAATSDHVTINFITVKKKKK 400
           NPPT       SDH +++   VK+ K+
Sbjct: 183 NPPTQLPAFGMSDHFSVDLQPVKRSKR 209


>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
          Length = 1097

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 320 NPPTSQTTAATSDHVTINFITVKKKKK 400
           NPPT       SDH +++   VK+ K+
Sbjct: 177 NPPTQLPAFGMSDHFSVDLQPVKRSKR 203


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 270  TVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPS 151
            TVPL P      TSP S PA+ P+ TPG+   T  G   S
Sbjct: 958  TVPLTPAA----TSPVS-PAAAPSTTPGAAPSTTPGAESS 992


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 257 NNGTVADNPEYYGFIIQPW 313
           N GT   +P+Y  + IQPW
Sbjct: 715 NPGTAVVHPQYAAYSIQPW 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,872
Number of Sequences: 59808
Number of extensions: 283574
Number of successful extensions: 941
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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