Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00004
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 1e-49
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 117 8e-27
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 117 8e-27
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 115 3e-26
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 48 6e-06
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 42 3e-04
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 35 0.055
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 34 0.096
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 32 0.39
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46) 31 0.51
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 31 0.90
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 30 1.2
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.7
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 4.8
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.3
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.3
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 8.4
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 8.4
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.4
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 8.4
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 8.4
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 27 8.4
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 8.4
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 8.4
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.4
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.4
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 8.4
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 8.4
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 192 bits (469), Expect = 1e-49
Identities = 100/152 (65%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIHPPPGVEASWWR*ETQEENYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLR 361
+Q +H + + +++NY+TP LAVL++YKVDENGKI RLR
Sbjct: 61 IQKESTLHLVLRLRGG--AKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLR 118
Query: 362 RECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF 457
REC E CGAGVFMA DR YCGKC T VF
Sbjct: 119 RECPSESCGAGVFMASHFDRQYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 441 IQKESTLH 448
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 517 IQKESTLH 524
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 57 SDYNIQKESTLHLV 70
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 133 SDYNIQKESTLHLV 146
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 209 SDYNIQKESTLHLV 222
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 285 SDYNIQKESTLHLV 298
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 361 SDYNIQKESTLHLV 374
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 437 SDYNIQKESTLHLV 450
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 513 SDYNIQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 57 SDYNIQKESTLHLV 70
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 133 SDYNIQKESTLHLV 146
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 209 SDYNIQKESTLHLV 222
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 285 SDYNIQKESTLHLV 298
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 361 SDYNIQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 117 bits (281), Expect = 8e-27
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQ 187
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 188 YPEG 199
+G
Sbjct: 136 IKQG 139
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 57 SDYNIQKESTLHLV 70
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 115 bits (276), Expect = 3e-26
Identities = 57/62 (91%), Positives = 59/62 (95%), Gaps = 2/62 (3%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 182 LQ 187
+Q
Sbjct: 139 IQ 140
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/33 (69%), Positives = 26/33 (78%), Gaps = 2/33 (6%)
Frame = +2
Query: 113 IPPNQQRLIFAGKQLEDGRTL--YGLQYPEGIH 205
IPP+QQRLIFAGKQLEDGRTL Y +Q +H
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 34
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 23 SDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 172
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDT 126
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 34.7 bits (76), Expect = 0.055
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQ 187
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL +
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 188 YPEG 199
+G
Sbjct: 67 LKQG 70
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 33.9 bits (74), Expect = 0.096
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 VKMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
V++++ V+ +G L++ + TIE ++ ++ DK G PP QR I K + +L
Sbjct: 32 VRLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESL 91
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 33.9 bits (74), Expect = 0.096
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLY--- 178
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
Query: 179 -GLQYPEGIHPPPGVEAS 229
P+G PG +A+
Sbjct: 47 GASNSPDGPSVHPGSQAA 64
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSD 52
>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
Length = 413
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 71 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQYPEGIHP 208
T+E ++ +K G+ + L +L+DG+ L GL+YPE + P
Sbjct: 311 TLEWAVSRHAEKAGLSREDRMLRVIRVELDDGQRLVGLRYPEQLIP 356
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +2
Query: 110 GIPPNQQRLIFAGKQLEDGRTLY----GLQYPEGIHPPPGVEAS 229
GIP +QRLIF GK L+D + L P+G PG +A+
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFDGASNSPDGPSVHPGSQAA 44
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 14 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKI 238
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 61 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWT 168
+ Y +E E + RQR +S E D+C K R+T
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFT 74
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 335 ENGKIHRLRRECTGEQC 385
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 50 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQYPEGIH 205
L ++ + T+ +K I+ +EG ++Q + F G QL D TL +G H
Sbjct: 22 LRIQLNLTVLRLKQLIEAQEGFGISEQEVHFQGNQLVDALTLGQQGVLDGSH 73
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 430 AVVTVLHHRHEHSGA 386
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 424
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 445
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 424
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 29 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 160
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 17 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQYPE 196
FV G+ ITL P + ++ + G P ++ K LED T+ L +
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 197 G 199
G
Sbjct: 229 G 229
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 323 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 418
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,462
Number of Sequences: 59808
Number of extensions: 366206
Number of successful extensions: 1029
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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