Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B15
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 30 0.96
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.3
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 28 3.9
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 3.9
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 28 3.9
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9) 27 6.8
SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15) 27 6.8
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_22559| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +2
Query: 332 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 478
GEGSKTWDR++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 52 GEGSKTWDRYEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
Score = 68.5 bits (160), Expect = 3e-12
Identities = 33/45 (73%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Frame = +1
Query: 199 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 327
+ VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTP
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTP 50
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 30.3 bits (65), Expect = 0.96
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 168 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 317
Y P +SY + CA T+ +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 198 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 317
S C GLC P + ++ + GPSP + DP+ P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 133 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 234
+ + K Q E + IH + +T ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +2
Query: 278 QSACQPRSCVSPPVKLLGGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 457
++ P S V P + ++ + T + + +++H R +P V +T++ E +
Sbjct: 1832 ETTMAPESTVGPEITIV--DNFSTRNNYGVKVHSRPGTTLAPKSTVASVTTMAPESTLAP 1889
Query: 458 EVTIA 472
E+TIA
Sbjct: 1890 EITIA 1894
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -1
Query: 499 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 359
FY L L V D L G+D DLF R VD+SLV +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 273 GPSPHANQDPAYHHP*NSLVVKVQRP 350
GP PH+ Q P HHP + ++ P
Sbjct: 1189 GPPPHSMQQPLLHHPQDPHHIQAMEP 1214
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 45 VQR*TIFDLKSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYSPHQ 182
+ R ++ +S ++ + +H S S V+ R+R G+G+ Y PHQ
Sbjct: 735 LHRLSVIPNRSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781
>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
Length = 198
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 111 GSRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 227
GSR R RHR PGR P P S+ ++ A R GL
Sbjct: 2 GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36
>SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)
Length = 978
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 270 KGPSPHANQDPAYHHP*NSLVVKVQRPGIVFRCEST 377
+GPSP+A PA +P KV+R G E T
Sbjct: 654 EGPSPYAQDGPAAEYPVKKRERKVRREGQFSNVEIT 689
>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 506 KNILLAALPTRRRWSPQP 453
+N+++ LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197
>SB_22559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 944
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 226 CADLINGAKKQKLRVKGPVRMPTKILRITTRKTP-WW*R 339
C D Q+LR+ P+ +P KI + TR+ WW R
Sbjct: 23 CMDTYCKVHLQRLRMGIPLAVPCKICGVGTRRYEIWWNR 61
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 100 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 222
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,414,030
Number of Sequences: 59808
Number of extensions: 361857
Number of successful extensions: 749
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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