Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A04
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 112 2e-25
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 80 1e-15
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 75 4e-14
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 64 6e-11
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 60 1e-09
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 50 2e-06
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 49 2e-06
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 49 3e-06
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 48 6e-06
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 45 5e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 44 1e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 43 2e-04
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 42 3e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 42 4e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 41 9e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 41 9e-04
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 41 9e-04
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 40 0.001
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 40 0.002
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 39 0.003
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.005
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 38 0.006
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.008
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 37 0.014
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 36 0.032
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 36 0.032
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 34 0.075
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.075
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 34 0.099
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 33 0.23
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 31 0.70
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 31 0.92
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.92
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 30 1.2
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 30 1.2
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 30 1.6
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.8
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 28 4.9
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 28 6.5
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46) 28 6.5
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05) 27 8.6
SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7) 27 8.6
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 112 bits (269), Expect = 2e-25
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Frame = +2
Query: 68 MDDDEK-GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
M + EK K+F+GGL+W T++E L+ YFS++G ++DCV+MK GRSRGFGFVT+
Sbjct: 43 MSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMK--RDGRSRGFGFVTYESSD 100
Query: 245 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQ-KPKRGGGYPKVFLGGLPSNVTETDLRXIFR 421
VN VL+ H LD R I+PK PR P+ K+F+GGL S E D++ F
Sbjct: 101 SVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFN 160
Query: 422 TLWEGHGGGHYV 457
+L +G G +
Sbjct: 161 SLCRKNGMGEVI 172
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRY------GEVIDCVVMKNSESG-RSRGFGFVTFADPSL 247
K+FVGGL+ T +E+++ YF+ GEVID + ++ ++ R RGF FVTF + +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 248 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKPK 340
V V H++ + + K P++ + K
Sbjct: 200 VEKVCAMKYHEIRMKQCEVKKAEPQSAMRKK 230
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 102 bits (244), Expect = 2e-22
Identities = 51/125 (40%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
++D + KLFVGGL+ ET+ E L+ YF YGE+ D VV+ +S + +SRGFG+VTFAD +
Sbjct: 9 NNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVT 68
Query: 251 NLVL----QNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
VL +NG H++DG+ ++ K PR K+F+GGLP + T+ D++
Sbjct: 69 RNVLKDKVENGAHRIDGKEVEVKRAIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQEAI 128
Query: 419 RTLWE 433
+L E
Sbjct: 129 ESLLE 133
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYF-SRYGEVIDCV--VMKNSESGRSRGFGFVT 229
N ++ K+FVGGL + ++E++Q S E +D V +MK + + RGF FV
Sbjct: 99 NSATSHEKTKKIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVE 158
Query: 230 FADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG 349
+ + + + G+ ++ K PR P GG
Sbjct: 159 LNNEDQADELCCVKKIHVKGKMVEAKKATPRDRNSPADGG 198
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 369 LAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+ G +R +F YG++ +VV++ D KKS G G+++F D
Sbjct: 18 VGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD 64
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 80.2 bits (189), Expect = 1e-15
Identities = 46/115 (40%), Positives = 66/115 (57%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
DD+ GKLFVGGLS+ET++E+L+ YFS+YGE++ + ++ +GR RGF FV F
Sbjct: 25 DDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF------- 77
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
HQ + IDPKP P + KP K+F+GGL ++ +R F
Sbjct: 78 ------KHQSEADAIDPKPAAP--IGKPPH-LRVKKIFVGGLKPETSDEKIREYF 123
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
K+FVGGL ETS E ++ YF + Y V + + S R RGF FV+F V+ + +
Sbjct: 104 KIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICE 163
Query: 266 NGPHQLDGRTIDPKPCNPRTLQK 334
H ++G ++ K P+ +Q+
Sbjct: 164 TQFHNIEGNKVEVKRALPKEVQQ 186
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/101 (38%), Positives = 63/101 (62%)
Frame = +2
Query: 116 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 295
+ S E L+++F ++GE+ +CVVM++ + RSRGFGF+TF DP V++VL +G +LDG+
Sbjct: 118 QASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKK 177
Query: 296 IDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ T K K+F+GGL +N +E D++ F
Sbjct: 178 M-------VTTTK--------KIFIGGLSTNTSEEDMKKYF 203
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/26 (53%), Positives = 24/26 (92%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEV 166
K+F+GGLS TS+E++++YFS++G+V
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKV 209
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F ++G++ E V+M D K+S G GFL+F+D
Sbjct: 128 FEKFGELKECVVMRDPVTKRSRGFGFLTFKD 158
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 70.5 bits (165), Expect = 9e-13
Identities = 39/83 (46%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Frame = +2
Query: 209 RGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPR----------TLQKPKRGGGYP 358
+GFGFVTF DP+ + VL PH LDG+TIDPKP PR + P+RG
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 359 -KVFLGGLPSNVTETDLRXIFRT 424
KVF+GGL TE DL+ F T
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFST 224
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 166
P GK+F+GGL++ T++E+L+ YFS YG V
Sbjct: 194 PQRGSANDGKVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 86 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
G L V GL + T++ ++ YF+R+GE+ C V + + RSRGFGFV F VL
Sbjct: 115 GDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLS 174
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP-KVFLGGLPSNVTETDLRXIFRTLWE 433
H++ GR C R L +PK P K+F+G LP + TE L F E
Sbjct: 175 TS-HRIQGRL-----CEVR-LPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGE 224
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQ 265
KLFVG L T+++ L YF+++GEV D + K R FGFVTFA + V++ +
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK-----PFRHFGFVTFASVANCVSIAFE 254
Query: 266 N 268
N
Sbjct: 255 N 255
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/91 (32%), Positives = 53/91 (58%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D + KLFVGG+ +E+ + L+++F+++GE+ + VV+K+ + +S+G+GFVT A
Sbjct: 6 DTKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAE 65
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPKRG 346
L +N ++GR + KP RG
Sbjct: 66 LACKNKRPMIEGRQANVNLAYLGAKPKPTRG 96
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLS 500
FF ++G++ E V++ D+ KKS G GF++
Sbjct: 29 FFAQFGEIREAVVIKDRVTKKSKGYGFVT 57
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 61.3 bits (142), Expect = 6e-10
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGE----VIDCVVMKNSESGRSRGFGFVTFAD 238
DD + KLFVGGL+ +T++E ++ YF + E + V + + G+SR F FV F++
Sbjct: 3 DDSKLMKLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEFSN 62
Query: 239 PS--LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRX 412
S + N+V H +D + ++ K PR K+F+GGL +E D++
Sbjct: 63 GSDIIDNIVFNFESHSIDNKQVEVKRAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDVKT 122
Query: 413 IFRTL 427
L
Sbjct: 123 ALAPL 127
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 359 KVFLGGLPSNVTETDLRXIFRTLWEG 436
K+F+GGL + TE +R F++ EG
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEG 34
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +2
Query: 62 PDMDDDEKGK--LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
P D EK +FVGGL+ T +E L+ YF ++GEV +M+ + G SR +GFV F
Sbjct: 70 PSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLFK 128
Query: 236 DPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXI 415
D VL+ H ++G+T+D + + +++GGLPS+ TE +R
Sbjct: 129 DDGPSKEVLKKS-HVINGKTVD-----------VGKSRNFRVIYVGGLPSHFTEQTVREH 176
Query: 416 FR 421
F+
Sbjct: 177 FK 178
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
LFV LS +T + ++ RYF YG+V ++ + E+G+S+G G V P VN +L+
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEP 380
Query: 272 PH 277
H
Sbjct: 381 VH 382
Score = 32.3 bits (70), Expect = 0.30
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KL V L ++T+ + L+ YF + GE+ ++ NSE F F + + V++
Sbjct: 237 KLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSEKRTCAAIVF--FRNLKDIKKVVEE 294
Query: 269 GPHQLDGRTIDPKPCNPRTLQKP---KRGGGYPKVFLGGLPSNVTETDLRXIFR 421
H + G + RT+Q P K+G +F+ L + E D+ FR
Sbjct: 295 N-HTIKGLKV-------RTVQLPNEEKQGVRERTLFVDNLSEDTKELDVLRYFR 340
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADP 241
D+ E+ K ++G L ++ ++ +LQ FSRY +V+D V+ + E+ R RGF FVTF +
Sbjct: 223 DLKMGEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKK 281
Query: 242 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGY 355
++ + + + + DGR++ R + RGGGY
Sbjct: 282 NMEDAINELDGQEFDGRSMKVNQARSREQRGGGRGGGY 319
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 179 VMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQ-KPKRGGG 352
V+ + E+GR RGFGFVTF ++ + + DG +D +P Q + +RGGG
Sbjct: 40 VITDRETGRPRGFGFVTFGSEDEMDKAID----KFDGEDLDGRPMKVNKAQPRGERGGG 94
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 54.4 bits (125), Expect = 7e-08
Identities = 32/91 (35%), Positives = 44/91 (48%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E+ +F+G LS++ +E L +F G C V+ ++ GRSRGFG+ F N
Sbjct: 178 EEMSVFLGNLSFDADEETLAAFFEEKGLSATCRVI--TQEGRSRGFGYADFTSKEDYNKA 235
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
L+ GR I P N KP RGGG
Sbjct: 236 LELNGEDCCGREIRINPAN----SKPSRGGG 262
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-QN 268
L V LS++T+ ++L F + V+ + ESG SRGFGFV + D VL +
Sbjct: 291 LIVRNLSYDTTTDSLGAAFEGCS---NAKVIFDRESGESRGFGFVDYDDVETAKKVLSEM 347
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
++DGR + +PRT + RGGG
Sbjct: 348 AGAEVDGRQVRLDFASPRT-EGGGRGGG 374
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLV 259
K ++VG L + + +L + F RYG+V+ ++++ E+ SRG F+ F D S N V
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAV 68
Query: 260 LQNGPHQLDGRTI 298
Q+ GRTI
Sbjct: 69 AAVNKKQMFGRTI 81
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 49.6 bits (113), Expect = 2e-06
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Frame = +2
Query: 59 NPDMD--DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+P MD + + +FVG L T + + YFS GE ++ V + SG+S+GF FV
Sbjct: 31 SPSMDLLEQSRRTIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRL 90
Query: 233 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRX 412
V VL H +D + +++K Y KV L +PS++ E+ +
Sbjct: 91 RKKEAVESVLGRDDHVIDNSDV--------SMEKQDT---YRKVILKNIPSSIGESQILE 139
Query: 413 IFRTLWE 433
F + E
Sbjct: 140 HFSSSGE 146
Score = 31.5 bits (68), Expect = 0.53
Identities = 26/111 (23%), Positives = 48/111 (43%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D K+ + + + + +FS GE+ + +N ++ +G VTFA +
Sbjct: 118 DTYRKVILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFE 177
Query: 257 VLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLR 409
V++ H + G I + L++PK K+ L LP NVT ++
Sbjct: 178 VVKKRKHHIHGYDIITE--YYMNLKQPK------KLCLKNLPYNVTVDQIK 220
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E+ + ++G LS+ ++ L+ F +V+D V+ + E+GR RGFGFVTF
Sbjct: 3 EEYRCYIGNLSYSVDEQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKE----E 57
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQ-KPKRGGG 352
++ + DG+ D +P Q + +RG G
Sbjct: 58 MEKAIDEFDGQDFDGRPMKVNQAQPRGERGAG 89
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/57 (33%), Positives = 36/57 (63%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D ++F G L E + E+L R F++Y + ++++ +S +S+G+GFV+F DP+
Sbjct: 213 DPNDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPN 269
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F +Y ++ I+ D+ KS G GF+SF+D
Sbjct: 237 FAKYTSFLKAKIVRDKKSNKSKGYGFVSFKD 267
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
DE+ L + + SQE++++ F G V C ++++ +G+S G+ FV + +P N
Sbjct: 24 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANK 83
Query: 257 VLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFR 421
++ NG +L +T+ P + + +++ GLP ++ E ++ +F+
Sbjct: 84 AVREMNGA-RLQNKTLKVSFARPSSTEIKN-----ANLYISGLPKDMKEEEVEALFK 134
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 268
+FVG + +E S+E L+ FS G VI ++ + E+G+ +G+GF + D ++N
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 269 GPHQLDGRTI 298
++L+GR +
Sbjct: 87 NGYELNGRAL 96
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Frame = +2
Query: 71 DDDEKG-KLFVGGLSWETSQENLQRYFSRYG-EVIDCVVMKNSESGRSRGFGFVTFADPS 244
D + +G KL++G L++ + + +++ F +G E +D ++++ ESGRSRGFGFV
Sbjct: 3 DGENRGRKLYIGNLNFNSDEGEIEQAFEEFGVEKVD--ILRDKESGRSRGFGFVLLQSAD 60
Query: 245 LVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
+ ++ + GR I +T RGGG
Sbjct: 61 QIAPAIEKMNQSSVGGRNITVALALDKT---ENRGGG 94
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNL 256
+K LFV L ++ + ++ FS++G V+ V + + +G+ +G+G+V + + S
Sbjct: 169 DKHTLFVSNLPFDAKESEIEELFSKHG-VVKQVRLVTNRAGKPKGYGYVEYEQESSASTA 227
Query: 257 VLQNGPHQLDGRTIDPKPCNPRTLQKPKR 343
VL ++ GRTI NP T + P R
Sbjct: 228 VLTLDKTEVKGRTISVALSNPPTRRGPPR 256
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYG-EVIDCVVMKN-------SESGRSRGFGFVTFA 235
+ K++ G L ++ +Q+ L+ F V D +++K + RSRGFGFVTFA
Sbjct: 48 DPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFA 107
Query: 236 DPSLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGG 376
+P +++ ++ GRT+ P R + GGGY + GG
Sbjct: 108 NPEDAQTAVKSLNGKEVQGRTLKIAPSISR--GRDGGGGGYRGGYRGG 153
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
++ ++ +F L+ +L+ +FS+ G+V D ++ + S RS+G ++ F D S V
Sbjct: 141 EEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAV 200
Query: 251 NLVLQNGPHQLDGRTI------DPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRX 412
L + +L G I K ++ K+ G ++++G L N+TE ++
Sbjct: 201 PLAIGLSGQKLLGAPIMVMLTQAEKNRLAAEAERLKQPLGPTRLYVGSLHFNITEAMVKA 260
Query: 413 IF 418
+F
Sbjct: 261 VF 262
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-Q 265
+L+VG L + ++ ++ F +G V ++ +SE+ RS+G+GFV F + + Q
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQ 302
Query: 266 NGPHQLDGRTIDPKPCNPR 322
+L GR + P R
Sbjct: 303 MNGFELAGRPLKIGPVTER 321
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 360 RCSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
R + H + + + F +G V V ++YD +S G GF+ F +
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFRE 292
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D D + +F+G L ++ +E L+ F+ G V ++++ ++G +GFG+V F
Sbjct: 49 DKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKD 108
Query: 245 LVNLVLQNGPHQLDGRTID--PKPCNPRT 325
V L+ + GR I P P+T
Sbjct: 109 AVVFALKMNNAEFKGRKIRVFPSKDKPQT 137
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCV-VMKNSESGRSRGFGFVTFA--DPSL 247
D LF+G L E ++ L FS +G ++ +M++S++G S+GF F+ FA D S
Sbjct: 97 DVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASD 156
Query: 248 VNLVLQNGPH 277
+ NG +
Sbjct: 157 AAIEAMNGQY 166
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
M P + ++ ++VGGL + S+ + F + G V++ + K+ + +G+GFV
Sbjct: 1 MAAGPIAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVE 60
Query: 230 F 232
F
Sbjct: 61 F 61
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/66 (28%), Positives = 38/66 (57%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D D ++FV G + ET++ L+ +F YG V + ++++ + G S+G+ F+TF +
Sbjct: 3 DQDISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRD-KHGVSKGYAFITFESQEVA 61
Query: 251 NLVLQN 268
+ + N
Sbjct: 62 DGLRDN 67
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L++ L E L+ FS YG + VMK+ + G S+GFGFV F+ P +
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAVT-- 270
Query: 272 PHQLDGRTIDPKP 310
+++GR + KP
Sbjct: 271 --EMNGRILISKP 281
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
++V + E ++ + G+++ VM + E G+S+GFGFV+F P
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETP 159
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/83 (22%), Positives = 46/83 (55%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
++ ++ +++ + + +L+ F YG + D +++ +++G+S+GFG+VT+ +
Sbjct: 58 EEHDQRTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIR-TQTGKSKGFGYVTYENAESA 116
Query: 251 NLVLQNGPHQLDGRTIDPKPCNP 319
L G H +DG+ + +P P
Sbjct: 117 QRALA-GTHIIDGKWVIAEPKMP 138
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/63 (26%), Positives = 37/63 (58%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D K+F+GGL +++ ++ S +GE+ ++K+S +G S+G+ F + D + ++
Sbjct: 670 DSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDV 729
Query: 257 VLQ 265
+Q
Sbjct: 730 AIQ 732
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN-G 271
+VGGL+ E ++ L F +G++ D + + + + RGFGFV F + N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 272 PHQLDGRTIDPKPCNPRTLQK 334
+L GRTI P +++
Sbjct: 68 ESELFGRTIRVNLAKPMKIKE 88
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 PDMD-DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
PD D LFV L+ T+ E+L+ FSR+G ++ C V+++ ++G S + F+ F
Sbjct: 111 PDADIKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEF 168
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/47 (40%), Positives = 33/47 (70%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+++GGLS + ++ L F+++G V D V++++ ESG+SR GFV F
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRD-ESGKSRQSGFVHF 571
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 53 RMNPDMDDDEKGK-LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
+ P D E GK L+V LS T +L+ FS+YG+V+ ++ NS++ ++ FG VT
Sbjct: 337 KATPTKDKKEGGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVT 396
Query: 230 FADPSLVNLVLQN-GPHQLDGRTI 298
+Q+ +L GR I
Sbjct: 397 MTTSEEAAKCIQHLHRTELHGRAI 420
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KL+V L+ +++++Q FS YG V + + + SRGF +V + DP L++
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKH 1217
Query: 269 -GPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPK 361
Q+DG+ I + P PR ++ R P+
Sbjct: 1218 MDGGQIDGQEIAVQSVLPPRPRDVRPAYRRPSPPR 1252
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
D L V L++ T+ E+L++ F +YG++ D + ++ + SRGF FV F
Sbjct: 13 DGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRF 64
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 62 PDMDDDEKGK--LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
PD +++ K L++ GL T+ ++L R +YG +I + + ++ +G+GFV F
Sbjct: 90 PDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFE 149
Query: 236 DP 241
P
Sbjct: 150 SP 151
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGF 223
+ + L++ L + L+ FS+YG+VI ++++ ++ S+G GF
Sbjct: 175 EQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDT-NSKGVGF 223
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
+ ++G LS+ ++ L+ F V+D V+ + E+GR RGFGFVT
Sbjct: 83 RCYIGNLSYSVDEQALEEKFHDCN-VVDVRVITDRETGRPRGFGFVT 128
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
M N + + +++VG L + +++L F +YG + D V +KN G F FV
Sbjct: 249 MSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIAD-VDLKN-RRGAGPPFAFVE 306
Query: 230 FADP-SLVNLVLQNGPHQLDGRTI 298
F DP + V H+ DG I
Sbjct: 307 FEDPRDAEDAVKGRDGHEFDGYRI 330
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D+D+ ++F+ S + E+++ F +YG + D V+K+ + +RG +V F S
Sbjct: 17 DVDNPPFSRVFIV-CSKRHNAEDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKAS 75
Query: 245 LVNLVLQNGPHQLDGRTI--DPKP 310
L + ++DGR I DPKP
Sbjct: 76 SAALACE----EMDGRNIGDDPKP 95
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
P+ D LFVG L S ++L+ F ++G V+D V +K G+ + FV FAD
Sbjct: 229 PEEDPKATRTLFVGNLETGISCQDLRLSFEKFGVVLD-VDIKRPARGQGNTYAFVKFAD 286
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
+F+ LS++++Q+N+ F ++G++ C V+ + + S+G FV + V L
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAAT 477
Query: 272 PHQLDGRTID 301
+G +D
Sbjct: 478 DEDSEGLFLD 487
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSR--GFGFVTFAD 238
+K +L + L++ ++ L+ FS +GEV + V + R+R GFGFV F +
Sbjct: 245 KKSRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTN 299
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSES-GRSRGFGFVTFADPSLVNLV 259
K +FV L + + + F G + ++K+ ++ R RGFG+VTFA L
Sbjct: 19 KTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDA-LK 77
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGG 349
++ + GR I + KP R G
Sbjct: 78 AKDNIKSIKGRPIHLDFSEKKARTKPGREG 107
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
P D+ + L+V + + + ++ F YG +++C ++++ +G +G GFV +
Sbjct: 125 PGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLY 181
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+V + ++ +QE + F + G V +M + + + +GF FVT A QN
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQE----EAQNA 332
Query: 272 PHQLDGRTIDPKPCNP---RTLQKPKR 343
L+G KP RTL + R
Sbjct: 333 IQTLNGFMYTNKPLQSSRIRTLNRRSR 359
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 179 VMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQ-LDGRTIDPKPCNPR--TLQKPKRGG 349
++ + E+GR RGFGFVTF + + Q LDGR + PR + +GG
Sbjct: 127 IITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGDSGGGGSQGG 186
Query: 350 GY 355
GY
Sbjct: 187 GY 188
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
LFVG L +E ++ S YG + ++++ +G S+G+GFV +A
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYA 162
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 134 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
++ FS+ G V V N +G SRGF FV +A
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYA 255
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
LFVG + T+ +L+ F RYGEVID + K + G + + FV FA+ S
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK--QPG-NNPYAFVQFAELS 298
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEV--IDCVVMKNSESGRSRGFGFVTFAD 238
E L+VG L +E++ ++F+RYG V + + +++E GR+ FV F D
Sbjct: 4 ETRHLWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRA---SFVDFVD 55
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVV 181
++VGG++ S++ ++R+F RYG V V+
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVI 359
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 182 MKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDP 304
+K+ +SGRS+ +GFV F D + N PH ++G+ P
Sbjct: 94 VKDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQKSGP 134
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 155 YGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQ 331
YGE+++ ++++ ++G+ +GF F+ + D L + N +L GRTI C+ +
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCS--NYR 59
Query: 332 KPK 340
+PK
Sbjct: 60 RPK 62
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 176 VVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG 349
++M + + R RGFGFVTF + + H ++ + ++ K P+ + +GG
Sbjct: 1 MLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPKEVMYSLQGG 58
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
++F+G + + ++ L F G + D +M + SG ++GF F TF++ QN
Sbjct: 153 QVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKD----EAQN 208
Query: 269 GPHQLDGRTIDP 304
+LD + I P
Sbjct: 209 AVKKLDNKEIRP 220
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVV--MKNSESGRSRGFGFVTFADPSLVNL 256
+LFVG + S++ + FS+ +D V+ + + G++RGF F+ + +L
Sbjct: 234 RLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQAASL 291
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 176 VVMKNSESGRSRGFGFVTFAD-PSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
V+M+ + RSRGFGFVT + L ++ + + +GR + + + +RGGG
Sbjct: 72 VIMEREQPERSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASKDSGGGGRRGGG 131
Query: 353 Y 355
Y
Sbjct: 132 Y 132
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +2
Query: 122 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTID 301
+ E+L+ F +G++ ++++ ++ ++G+G+V F S + L+N L +
Sbjct: 65 NDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCDKSLKAVWAE 124
Query: 302 PK 307
PK
Sbjct: 125 PK 126
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+LFV +S +QE + R F + C + +N +G S+GF +VT+
Sbjct: 204 RLFVI-ISTAVTQEQVVRLFDIIPGMQVCDLKRNYNTGESKGFAYVTY 250
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
E + V LS ET + +LQ F G + + K+ + +S+GF F+ F
Sbjct: 179 ETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 155 YGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQNGPH-----QLDGRTIDPKPCN 316
Y EVI V+ + E+ RSR FG+VTF D + + Q G ++ GR ++ +
Sbjct: 2 YAEVI---VVYDRETRRSRNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRALNIEYAQ 58
Query: 317 PRTLQKPKRGG 349
+ P+RGG
Sbjct: 59 EKESSAPRRGG 69
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 441 EVVIMYDQXKKKSXGXGFLSFEDE 512
EV+++YD+ ++S G+++F DE
Sbjct: 4 EVIVVYDRETRRSRNFGYVTFRDE 27
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/89 (26%), Positives = 37/89 (41%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E K+++G L S+ ++ F YG + D V +N GF F F D
Sbjct: 30 EMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPP-----GFAFCIFDD----RRD 80
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQKPKRG 346
++ +LDGR I + + P RG
Sbjct: 81 AEDAVRELDGRYICGQRVRVELAKGPSRG 109
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
+LFVG LS ET +L+ F YG+++ C + +GF+ + DP
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDL--------KTAYGFIEYEDP 49
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.70
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYF----SRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
+ +VG LS + ++E+L +F + Y V + +SG+S GFGFV +L
Sbjct: 6 RFYVGNLSVKATREDLSHHFGLDATPYLRSSCWVELAVEKSGKSLGFGFVNVPKHLADHL 65
Query: 257 VLQNGPHQLDGR-TIDP---KPCNPRTLQK---PKRGGGYPKV--FLGGLPSNV 391
+ N D R TI+P K P + P GG +GG PS++
Sbjct: 66 MHLNQTKLFDKRITIEPARGKDTPPSMITPGVLPSAPGGVASYTGSMGGRPSSI 119
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 197 SGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKPC 313
+GRS+G+ +V F + S V L +++GR + PC
Sbjct: 2 AGRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFISPC 40
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSR 211
D KLFVG + +++L+ F YG++ + ++K+ +G+ +
Sbjct: 166 DSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 62 PDMDDDEK--GKLFVGGLSWETSQENLQRYFSRYGEV 166
P +D E+ +FVG L ++ L++YFS+YGEV
Sbjct: 11 PTPEDPERLDRTVFVGNLPLTLKKKALKKYFSKYGEV 47
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
++++G L + T++++++R+F YG + D + +KN+ +GFV F D
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRD-INLKNN-------YGFVEFED 45
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 359 KVFLGGLPSNVTETDLRXIFRT 424
+V+LG LP TE D+R FR+
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRS 25
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRG 214
K K+FVG + ++ L+ +F +G+V+ ++ + RS+G
Sbjct: 78 KCKVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 155 YGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
YGE+++ ++++ ++G+ +GF F+ + D L + N
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDN 39
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 47 GMRMNPDMDDDEKG-KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGF 223
G R P +E G ++F+G + + ++ L + GE+ + + + +G ++GF F
Sbjct: 139 GERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAF 198
Query: 224 VTFAD 238
TF +
Sbjct: 199 CTFTE 203
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.9 bits (64), Expect = 1.6
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Frame = +2
Query: 53 RMNPDMDDDEKGK------------LFVGGLSWETSQEN-LQRYFSRYGEVIDCVVMKNS 193
R++PD DD E + + + GL E S+++ LQ ++ D +++N
Sbjct: 308 RLSPDRDDREHRRQGPRDPGPPTSVIMLHGLRDEISEDDVLQELYAAEVAFRDVRIVRN- 366
Query: 194 ESGRSRGFGFVTFADPSLVNL---VLQNGPHQLDGRTIDPKPCNPRTLQK 334
+ G +RGFGFV F P L+ GP ++ G I + P+ Q+
Sbjct: 367 KIGYTRGFGFVEFDTPEAAKEWMDYLKGGPLKVLGYNIGVEYSRPKEGQE 416
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 184 EE*RVRTFE-GLWFRDIC*--SFTGQPRATEWTSST*WQDHRP*AVQSSHSSKTETWRWI 354
EE R R E +W DI F G R TS+ W D Q H+ T T WI
Sbjct: 492 EELRQRVLEISIWDHDIASRDEFLGGLRLGLGTSANEWDDSSKDEAQIWHTMLTRTNVWI 551
Query: 355 P*GVPWRAAIERYRNR 402
VP R ++ ++++
Sbjct: 552 QVVVPLRPNMDAHKHQ 567
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFV + E ++++ FS YGE+ + V + +G +G+ V +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEY 341
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 279 NLMAG-PSTLSRAILALFKNRNVAVDTLRCSLAGCHRTLPKPISGXFFGRYGKVMEVVIM 455
N+ G PS + +A + + A R +A H L + F +GKV+ +
Sbjct: 172 NIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLS 231
Query: 456 YDQXKKKSXGXGFLSFEDEXS 518
+ K G GF+ +E++ S
Sbjct: 232 KEPMTGKHKGYGFIEYENQQS 252
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 302 PKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
P P P QK K G VF+GGLP ++ E + IF
Sbjct: 334 PPPDMPMQKQKEKPEG-CRTVFIGGLPESINEHIINEIF 371
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 405 RSVSVTFDGSPPRNTLGYPPPRFG 334
R+++VT SP LG+PPP+ G
Sbjct: 237 RNIAVTLAISPTNGMLGHPPPKQG 260
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVI 169
++ + +L V GL WE E+L S YGE I
Sbjct: 185 EEVSRARLQVHGLPWEVPDEDLVALLSPYGEGI 217
>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
Length = 413
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 361 GVPWRAAIERYRNRSQG-----YFSDAMGRSWRWSLCMIXRRKS 477
G+ W AA++RY N +QG Y+S R R+ L I + S
Sbjct: 163 GIEWPAAMKRYENSAQGKHDGFYWSKREQRYQRFYLLAIQKENS 206
>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
Length = 410
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVI 169
+ +L V GL WE E+L S YGE I
Sbjct: 81 RARLQVHGLPWEVPDEDLVALLSPYGEGI 109
>SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)
Length = 493
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 299 DPKPCNPRTLQKPKRGGGYPK 361
+PKP NP T KP G +PK
Sbjct: 281 NPKPTNPGTHPKPMNPGTHPK 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,069,603
Number of Sequences: 59808
Number of extensions: 386521
Number of successful extensions: 1246
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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