Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a16f
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 31 1.1
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_40684| Best HMM Match : NIF (HMM E-Value=0) 30 1.9
SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.8
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 28 7.7
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 7.7
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5) 28 7.7
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 280 LMSSNMVCLTISSSRPCYTPWRSP*CPQTWSAGGYG 173
L ++N C I+ C T W P C + SAG YG
Sbjct: 673 LCANNGTCNAITGRCSCGTGWTGPSCNASCSAGRYG 708
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 252 PYPPADHVILLGDLLDVLKH--GRLEDMVKQLHDAKLLHLHVKVYHWF 115
P PA L DL D+ L + D LLHLHV VY++F
Sbjct: 125 PLVPASVGSWLNDLFDIFTRLAAFLTSRPGNIPDVYLLHLHVSVYNYF 172
>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 375 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 545
+L ET VH + ++E+A F V Y + VF+RT ++ ER++ V FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279
Query: 546 A 548
+
Sbjct: 280 S 280
>SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -3
Query: 342 RHRHSCTCRNFSRCYTPWRSP*CPQTWSA*PYPPADHVILLGDLLDVLKHGRLEDMVKQL 163
+H ++C + Y+P SP + SA PP D +++L + +
Sbjct: 130 QHPNTCNGLPITTVYSPTVSPSYGRGCSAPTTPPLDLLLVLHVKI-YYWYSTSRSTTGTP 188
Query: 162 HDAKLLHLHVKVYHWF 115
LL LHVK+Y+W+
Sbjct: 189 RQDLLLVLHVKIYYWY 204
>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 264 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 440
+ ++I I K++ K +K MN++ + MEMY ML TF+ + + K+
Sbjct: 71 IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128
>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1011
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 486 TACWMRERINGGMFVYAFTAACFHR 560
TAC+ + I+GG+ V+++ + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 27.9 bits (59), Expect = 7.7
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +3
Query: 264 MFEDIKEIAKEYNI--EKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 437
+ ++I I K++ K +K MN++ + ME Y ML TF+ + ++ M +++
Sbjct: 645 IMKEIGAIVKKHTDVNSKGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLE 703
Query: 438 VFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTDCKGLYLPAPYEIYPYFF 617
+ Y +K F R R+ G++ Y + + F R D K LPA + Y +
Sbjct: 704 RLGLKYTSKSFK-GKRLDLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY 754
Query: 618 VDSHV 632
D H+
Sbjct: 755 -DQHI 758
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 532 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 624
+LLLP +A T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238
>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
Length = 289
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 653 HHKGFTDDMAVN-EEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHE 477
H KG + MA +E I + T S ++ S++ D H S SH +R P
Sbjct: 63 HEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDS 122
Query: 476 NIEVLS 459
+ +S
Sbjct: 123 HRSCIS 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,267
Number of Sequences: 59808
Number of extensions: 398703
Number of successful extensions: 1171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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